entrez parser is much faster (validation of xml from API is disabled)

annotation/src/main/java/lcsb/mapviewer/annotation/services/annotators/EntrezAnnotator.java

 package lcsb.mapviewer.annotation.services.annotators;
 
 import java.io.IOException;
+import java.io.StringReader;
 import java.net.HttpURLConnection;
 import java.util.ArrayList;
 import java.util.Collections;
@@ -8,9 +9,14 @@ import java.util.HashSet;
 import java.util.List;
 import java.util.Set;
 
+import javax.xml.parsers.DocumentBuilder;
+import javax.xml.parsers.DocumentBuilderFactory;
+
 import org.apache.log4j.Logger;
+import org.w3c.dom.Document;
 import org.w3c.dom.Node;
 import org.w3c.dom.NodeList;
+import org.xml.sax.InputSource;
 
 import lcsb.mapviewer.annotation.cache.GeneralCacheInterface;
 import lcsb.mapviewer.annotation.cache.SourceNotAvailable;
@@ -211,11 +217,10 @@ public class EntrezAnnotator extends ElementAnnotator implements IExternalServic
 		EntrezData result = entrezSerializer.xmlToObject(super.getCacheNode(ENTREZ_DATA_PREFIX + entrezMiriamData.getResource()));
 		if (result == null) {
 			String query = REST_API_URL + entrezMiriamData.getResource();
-			logger.debug(query);
 			try {
 				String content = getWebPageContent(query);
 				result = new EntrezData();
-				Node xml = getXmlDocumentFromString(content);
+				Node xml = getXmlDocumentFromString(content, false);
 
 				Node response = getNode("Entrezgene-Set", xml.getChildNodes());
 				if (response != null) {

annotation/src/test/java/lcsb/mapviewer/annotation/services/annotators/EntrezAnnotatorTest.java

@@ -49,7 +49,7 @@ public class EntrezAnnotatorTest extends AnnotationTestFunctions {
 	@Test
 	public void testGetAnnotationsForEntrezId() throws Exception {
 		try {
-			MiriamData nsmf = new MiriamData(MiriamType.ENTREZ, "84532");
+			MiriamData nsmf = new MiriamData(MiriamType.ENTREZ, "6647");
 			GenericProtein proteinAlias = new GenericProtein("id");
 			proteinAlias.addMiriamData(nsmf);
 			entrezAnnotator.annotateElement(proteinAlias);