Merge branch 'import-from-sbgn-issue' into 'master' (199de8bc) · Commits · minerva / core

Commit 199de8bc authored 6 years ago by Piotr Gawron

Merge branch 'import-from-sbgn-issue' into 'master'

Import from sbgn issue

Closes #622

See merge request !545

parents 6a352b23 a77d2f46

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2 merge requests!630WIP: Resolve "The privileges of a new user are not saved in some cases",!545Import from sbgn issue

Pipeline #7950 passed 6 years ago

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annotation/src/main/java/lcsb/mapviewer/annotation/services/annotators/ElementAnnotator.java 5 additions, 0 deletions

...ewer/annotation/services/annotators/ElementAnnotator.java
annotation/src/main/java/lcsb/mapviewer/annotation/services/annotators/ReconAnnotator.java 26 additions, 0 deletions

...viewer/annotation/services/annotators/ReconAnnotator.java
converter-CellDesigner/src/main/java/lcsb/mapviewer/converter/model/celldesigner/CellDesignerElementCollection.java 39 additions, 0 deletions

...ter/model/celldesigner/CellDesignerElementCollection.java
converter-CellDesigner/src/main/java/lcsb/mapviewer/converter/model/celldesigner/alias/SpeciesAliasXmlParser.java 76 additions, 69 deletions

...erter/model/celldesigner/alias/SpeciesAliasXmlParser.java
converter-CellDesigner/src/main/java/lcsb/mapviewer/converter/model/celldesigner/species/AntisenseRnaXmlParser.java 4 additions, 43 deletions

...ter/model/celldesigner/species/AntisenseRnaXmlParser.java
converter-CellDesigner/src/main/java/lcsb/mapviewer/converter/model/celldesigner/species/GeneXmlParser.java 4 additions, 53 deletions

...r/converter/model/celldesigner/species/GeneXmlParser.java
converter-CellDesigner/src/main/java/lcsb/mapviewer/converter/model/celldesigner/species/ModificationResidueXmlParser.java 249 additions, 0 deletions

...el/celldesigner/species/ModificationResidueXmlParser.java
converter-CellDesigner/src/main/java/lcsb/mapviewer/converter/model/celldesigner/species/ProteinXmlParser.java 5 additions, 54 deletions

...onverter/model/celldesigner/species/ProteinXmlParser.java
converter-CellDesigner/src/main/java/lcsb/mapviewer/converter/model/celldesigner/species/RnaXmlParser.java 4 additions, 38 deletions

...er/converter/model/celldesigner/species/RnaXmlParser.java
converter-CellDesigner/src/main/java/lcsb/mapviewer/converter/model/celldesigner/species/SpeciesCollectionXmlParser.java 1 addition, 1 deletion

...odel/celldesigner/species/SpeciesCollectionXmlParser.java
converter-CellDesigner/src/main/java/lcsb/mapviewer/converter/model/celldesigner/species/SpeciesSbmlParser.java 5 additions, 4 deletions

...nverter/model/celldesigner/species/SpeciesSbmlParser.java
converter-CellDesigner/src/test/java/lcsb/mapviewer/converter/model/celldesigner/ModificationTest.java 0 additions, 4 deletions

...viewer/converter/model/celldesigner/ModificationTest.java
converter-CellDesigner/src/test/java/lcsb/mapviewer/converter/model/celldesigner/alias/SpeciesAliasXmlParserTest.java 3 additions, 2 deletions

...r/model/celldesigner/alias/SpeciesAliasXmlParserTest.java
converter-CellDesigner/src/test/java/lcsb/mapviewer/converter/model/celldesigner/species/AllSpeciesTests.java 11 additions, 10 deletions

...converter/model/celldesigner/species/AllSpeciesTests.java
converter-CellDesigner/src/test/java/lcsb/mapviewer/converter/model/celldesigner/species/GeneXmlParserTest.java 0 additions, 24 deletions

...nverter/model/celldesigner/species/GeneXmlParserTest.java
converter-CellDesigner/src/test/java/lcsb/mapviewer/converter/model/celldesigner/species/ModificationResidueXmlParserTest.java 44 additions, 0 deletions

...elldesigner/species/ModificationResidueXmlParserTest.java
converter-SBGNML/src/main/java/lcsb/mapviewer/converter/model/sbgnml/SbgnmlXmlExporter.java 85 additions, 65 deletions

...b/mapviewer/converter/model/sbgnml/SbgnmlXmlExporter.java
converter-SBGNML/src/main/java/lcsb/mapviewer/converter/model/sbgnml/SbgnmlXmlParser.java 37 additions, 29 deletions

...csb/mapviewer/converter/model/sbgnml/SbgnmlXmlParser.java
converter-SBGNML/src/test/java/lcsb/mapviewer/converter/model/sbgnml/CellDesignerToSbgnTest.java 29 additions, 2 deletions

...viewer/converter/model/sbgnml/CellDesignerToSbgnTest.java
converter-SBGNML/src/test/java/lcsb/mapviewer/converter/model/sbgnml/SbgnmlXmlParserTest.java 0 additions, 24 deletions

...mapviewer/converter/model/sbgnml/SbgnmlXmlParserTest.java

with 627 additions and 422 deletions

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