pathway color is used for font

converter-graphics/src/main/java/lcsb/mapviewer/converter/graphics/bioEntity/element/compartment/PathwayCompartmentConverter.java

@@ -24,62 +24,65 @@ import lcsb.mapviewer.model.map.species.Species;
  */
 public class PathwayCompartmentConverter extends CompartmentConverter<PathwayCompartment> {
 
-	/**
-	 * Default constructor.
-	 * 
-	 * @param colorExtractor
-	 *          Object that helps to convert {@link ColorSchema} values into
-	 *          colors when drawing {@link Species}
-	 */
-	public PathwayCompartmentConverter(ColorExtractor colorExtractor) {
-		super(colorExtractor);
-	}
+  /**
+   * Default constructor.
+   * 
+   * @param colorExtractor
+   *          Object that helps to convert {@link ColorSchema} values into colors
+   *          when drawing {@link Species}
+   */
+  public PathwayCompartmentConverter(ColorExtractor colorExtractor) {
+    super(colorExtractor);
+  }
 
-	/**
-	 * Background color of drawn compartments.
-	 */
-	private Color backgroundColor = Color.LIGHT_GRAY;
+  /**
+   * Background color of drawn compartments.
+   */
+  private Color backgroundColor = Color.LIGHT_GRAY;
 
-	@Override
-	public void draw(final PathwayCompartment compartment, final Graphics2D graphics, final ConverterParams params) throws DrawingException {
-		// keep the old values of colors and line
-		Color oldColor = graphics.getColor();
-		Stroke oldStroke = graphics.getStroke();
+  @Override
+  public void draw(final PathwayCompartment compartment, final Graphics2D graphics, final ConverterParams params)
+      throws DrawingException {
+    // keep the old values of colors and line
+    Color oldColor = graphics.getColor();
+    Stroke oldStroke = graphics.getStroke();
 
-		Shape shape = new Rectangle2D.Double(compartment.getX(), compartment.getY(), compartment.getWidth(), compartment.getHeight());
+    Shape shape = new Rectangle2D.Double(compartment.getX(), compartment.getY(), compartment.getWidth(),
+        compartment.getHeight());
 
-		Color color = compartment.getColor();
+    Color color = compartment.getColor();
 
-		// fill the background
-		boolean fill = !isTransparent(compartment, params);
-		if (fill) {
-			graphics.setColor(backgroundColor);
-		} else {
-			Color bgAlphaColor = new Color(0, 0, 0, getAlphaLevel());
-			graphics.setColor(bgAlphaColor);
-		}
-		graphics.fill(shape);
+    // fill the background
+    boolean fill = !isTransparent(compartment, params);
+    if (fill) {
+      graphics.setColor(backgroundColor);
+    } else {
+      Color bgAlphaColor = new Color(0, 0, 0, getAlphaLevel());
+      graphics.setColor(bgAlphaColor);
+    }
+    graphics.fill(shape);
 
-		// draw the border
-		graphics.setColor(color);
-		graphics.setStroke(LineType.SOLID_BOLD.getStroke());
-		graphics.draw(shape);
+    // draw the border
+    graphics.setColor(color);
+    graphics.setStroke(LineType.SOLID_BOLD.getStroke());
+    graphics.draw(shape);
 
-		// restore old color and line type
-		graphics.setColor(oldColor);
-		graphics.setStroke(oldStroke);
+    // draw description of the compartment
+    if (fill) {
+      Point2D tmpPoint = compartment.getNamePoint();
+      compartment.setNamePoint(compartment.getCenter());
+      drawText(compartment, graphics, params);
+      compartment.setNamePoint(tmpPoint);
+    } else {
+      if (!compartment.containsIdenticalSpecies()) {
+        drawText(compartment, graphics, params);
+      }
+    }
 
-		// draw description of the compartment
-		if (fill) {
-			Point2D tmpPoint = compartment.getNamePoint();
-			compartment.setNamePoint(compartment.getCenter());
-			drawText(compartment, graphics, params);
-			compartment.setNamePoint(tmpPoint);
-		} else {
-			if (!compartment.containsIdenticalSpecies()) {
-				drawText(compartment, graphics, params);
-			}
-		}
-	}
+    // restore old color and line type
+    graphics.setColor(oldColor);
+    graphics.setStroke(oldStroke);
+
+  }
 
 }