refactored SbmlParser to use the new Converter class

converter-sbml/src/main/java/lcsb/mapviewer/converter/model/sbml/SbmlParser.java

@@ -19,14 +19,13 @@ import org.sbml.jsbml.ext.SBasePlugin;
 import org.sbml.jsbml.ext.layout.Layout;
 import org.sbml.jsbml.ext.layout.LayoutModelPlugin;
 import org.sbml.jsbml.ext.multi.MultiModelPlugin;
-import org.sbml.jsbml.ext.render.LocalStyle;
 
 import lcsb.mapviewer.commands.CommandExecutionException;
 import lcsb.mapviewer.commands.layout.ApplySimpleLayoutModelCommand;
 import lcsb.mapviewer.common.MimeType;
 import lcsb.mapviewer.converter.ConverterException;
 import lcsb.mapviewer.converter.ConverterParams;
-import lcsb.mapviewer.converter.IConverter;
+import lcsb.mapviewer.converter.Converter;
 import lcsb.mapviewer.converter.InvalidInputDataExecption;
 import lcsb.mapviewer.converter.model.sbml.compartment.SbmlCompartmentParser;
 import lcsb.mapviewer.converter.model.sbml.reaction.SbmlReactionParser;
@@ -49,7 +48,7 @@ import lcsb.mapviewer.model.map.species.Species;
 import lcsb.mapviewer.model.map.species.field.ModificationResidue;
 import lcsb.mapviewer.model.map.species.field.SpeciesWithModificationResidue;
 
-public class SbmlParser implements IConverter {
+public class SbmlParser extends Converter {
 
   /**
    * Default class logger.
@@ -275,13 +274,7 @@ public class SbmlParser implements IConverter {
   }
 
   @Override
-  public InputStream exportModelToInputStream(Model model) throws ConverterException, InconsistentModelException {
-    String exportedString = toXml(model);
-    InputStream inputStream = new ByteArrayInputStream(exportedString.getBytes());
-    return inputStream;
-  }
-
-  private String toXml(Model model) throws ConverterException {
+  public String model2Xml(Model model) throws ConverterException {
     try {
       SbmlExporter sbmlExporter = new SbmlExporter();
       sbmlExporter.setProvideDefaults(provideDefaults);
@@ -291,18 +284,6 @@ public class SbmlParser implements IConverter {
     }
   }
 
-  @Override
-  public File exportModelToFile(Model model, String filePath)
-      throws ConverterException, InconsistentModelException, IOException {
-    File file = new File(filePath);
-    String exportedString = toXml(model);
-    FileWriter fileWriter = new FileWriter(file);
-    fileWriter.write(exportedString);
-    fileWriter.flush();
-    fileWriter.close();
-    return file;
-  }
-
   @Override
   public String getCommonName() {
     return "SBML";