reaction types replaced with AF and PD group

CHANGELOG

 minerva (16.1.0~alpha.0) stable; urgency=medium
   * Improvement: possibility to register map in minerva-net (#1595)
+  * Small improvement: reaction type list simplified in the export network
+    (#1246)
   * Small improvement: export to image allows to define size of the image (#955)
   * Small improvement: AVOGADRO unit type from SBML is parsed properly (#1612)
   * Small improvement: data overlays have automatically generated legend (#205,

frontend-js/src/main/js/gui/export/NetworkExportPanel.js

@@ -12,6 +12,36 @@ var Functions = require('../../Functions');
 var ValidationError = require('../../ValidationError');
 var Alias = require('../../map/data/Alias');
 
+var ACTIVITY_FLOW_TYPES = [
+  "Reduced modulation",
+  "Reduced physical stimulation",
+  "Reduced trigger",
+  "Unknown reduced modulation",
+  "Unknown reduced physical stimulation",
+  "Unknown reduced trigger",
+  "Negative influence",
+  "Positive influence",
+  "Unknown negative influence",
+  "Unknown positive influence"
+];
+var PROCESS_DESCRIPTION_TYPES = [
+  "Dissociation",
+  "Heterodimer association",
+  "Inhibition",
+  "Known transition omitted",
+  "Modulation",
+  "Physical stimulation",
+  "State transition",
+  "Transcription",
+  "Translation",
+  "Transport",
+  "Trigger",
+  "Truncation",
+  "Unknown catalysis",
+  "Unknown inhibition",
+  "Unknown transition"
+];
+
 /**
  *
  * @param {Configuration} [params.configuration]
@@ -45,7 +75,16 @@ NetworkExportPanel.prototype.init = function () {
   elementTypeDiv.appendChild(self._createSelectTypeDiv(configuration.getElementTypes(), "Element type"));
   element.appendChild(elementTypeDiv);
   var reactionTypeDiv = Functions.createElement({type: "div", name: "reactionTypes"});
-  reactionTypeDiv.appendChild(self._createSelectTypeDiv(configuration.getReactionTypes(), "Reaction type"));
+  reactionTypeDiv.appendChild(self._createSelectTypeDiv(
+    [{
+      name: "Activity flow",
+      parentClass: "Reaction",
+      className: "ActivityFlow"
+    }, {
+      name: "Process description",
+      parentClass: "Reaction",
+      className: "ProcessDescription"
+    }], "Reaction type"));
   element.appendChild(reactionTypeDiv);
   var submapDiv = Functions.createElement({type: "div", name: "submapTypes"});
   submapDiv.appendChild(self._createSelectSubmapDiv(self.getProject().getModels()));
@@ -144,7 +183,15 @@ NetworkExportPanel.prototype.getAllColumns = function () {
  * @returns {boolean}
  */
 function matchReaction(reaction, elementIds, reactionTypes, submapIds) {
-  if ($.inArray(reaction.getType(), reactionTypes) === -1) {
+  var types = [];
+
+  if ($.inArray("Activity flow", reactionTypes) >= 0) {
+    types = types.concat(ACTIVITY_FLOW_TYPES);
+  }
+  if ($.inArray("Process description", reactionTypes) >= 0) {
+    types = types.concat(PROCESS_DESCRIPTION_TYPES);
+  }
+  if ($.inArray(reaction.getType(), types) === -1) {
     return false;
   }
   if ($.inArray(reaction.getModelId(), submapIds) === -1) {