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Commit 3e38a4e8 authored by Piotr Gawron's avatar Piotr Gawron
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new miriam type urns added

parent 1870919e
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2 merge requests!630WIP: Resolve "The privileges of a new user are not saved in some cases",!521Resolve "SBML upload error, files from BioModels"
......@@ -81,7 +81,8 @@ public enum MiriamType {
*/
CHEBI("Chebi",
"http://www.ebi.ac.uk/chebi/",
new String[] { "urn:miriam:obo.chebi", "urn:miriam:chebi" },
new String[] { "urn:miriam:obo.chebi", "urn:miriam:chebi",
"http://identifiers.org/chebi/", "http://identifiers.org/obo.chebi/" },
new Class<?>[] { Chemical.class, Drug.class, }, "MIR:00000002",
new Class<?>[] { Chemical.class }),
......@@ -128,7 +129,7 @@ public enum MiriamType {
*/
DOI("Digital Object Identifier",
"http://www.doi.org/",
new String[] { "urn:miriam:doi" },
new String[] { "urn:miriam:doi", "http://identifiers.org/doi/" },
new Class<?>[] { Reaction.class }, "MIR:00000019"),
/**
......@@ -159,7 +160,7 @@ public enum MiriamType {
*/
ENSEMBL("Ensembl",
"www.ensembl.org",
new String[] { "urn:miriam:ensembl" },
new String[] { "urn:miriam:ensembl", "http://identifiers.org/ensembl/" },
new Class<?>[] { Protein.class, Gene.class, Rna.class }, "MIR:00000003"),
/**
......@@ -183,7 +184,8 @@ public enum MiriamType {
*/
GO("Gene Ontology",
"http://amigo.geneontology.org/amigo",
new String[] { "urn:miriam:obo.go", "urn:miriam:go", "http://identifiers.org/go/" },
new String[] { "urn:miriam:obo.go", "urn:miriam:go", "http://identifiers.org/go/",
"http://identifiers.org/obo.go/" },
new Class<?>[] { Phenotype.class, Compartment.class, Complex.class }, "MIR:00000022"),
/**
......@@ -217,7 +219,7 @@ public enum MiriamType {
*/
INTERPRO("InterPro",
"http://www.ebi.ac.uk/interpro/",
new String[] { "urn:miriam:interpro" },
new String[] { "urn:miriam:interpro", "http://identifiers.org/interpro/" },
new Class<?>[] { Protein.class, Complex.class }, "MIR:00000011"),
/**
......@@ -225,7 +227,7 @@ public enum MiriamType {
*/
KEGG_COMPOUND("Kegg Compound",
"http://www.genome.jp/kegg/ligand.html",
"urn:miriam:kegg.compound",
new String[] { "urn:miriam:kegg.compound", "http://identifiers.org/kegg.compound/" },
new Class<?>[] { Chemical.class }, "MIR:00000013"),
/**
......@@ -249,7 +251,7 @@ public enum MiriamType {
*/
KEGG_PATHWAY("Kegg Pathway",
"http://www.genome.jp/kegg/pathway.html",
"urn:miriam:kegg.pathway",
new String[] { "urn:miriam:kegg.pathway", "http://identifiers.org/kegg.pathway/" },
new Class<?>[] { Reaction.class }, "MIR:00000012"),
/**
......@@ -257,7 +259,7 @@ public enum MiriamType {
*/
KEGG_REACTION("Kegg Reaction",
"http://www.genome.jp/kegg/reaction/",
"urn:miriam:kegg.reaction",
new String[] { "urn:miriam:kegg.reaction", "http://identifiers.org/kegg.reaction/" },
new Class<?>[] { Reaction.class }, "MIR:00000014"),
/**
......@@ -310,7 +312,7 @@ public enum MiriamType {
*/
OMIM("Online Mendelian Inheritance in Man",
"http://omim.org/",
new String[] { "urn:miriam:omim" },
new String[] { "urn:miriam:omim", "http://identifiers.org/mim/" },
new Class<?>[] { Phenotype.class }, "MIR:00000016"),
/**
......@@ -377,7 +379,7 @@ public enum MiriamType {
*/
REACTOME("Reactome",
"http://www.reactome.org/",
"urn:miriam:reactome",
new String[] { "urn:miriam:reactome", "http://identifiers.org/reactome/" },
new Class<?>[] { Reaction.class }, "MIR:00000018"),
/**
......@@ -461,7 +463,7 @@ public enum MiriamType {
*/
UNIPROT("Uniprot",
"http://www.uniprot.org/",
"urn:miriam:uniprot",
new String[] { "urn:miriam:uniprot", "http://identifiers.org/uniprot/" },
new Class<?>[] { Protein.class, Gene.class, Rna.class }, "MIR:00000005"),
/**
......
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