chemical contains synonyms

annotation/src/main/java/lcsb/mapviewer/annotation/data/Chemical.java

@@ -304,4 +304,8 @@ public class Chemical implements Serializable, TargettingStructure {
 		return getInferenceNetwork();
 	}
 
+  public void addSynonyms(List<String> synonyms) {
+    this.synonyms.addAll(synonyms);
+  }
+
 }

annotation/src/main/java/lcsb/mapviewer/annotation/services/ChemicalParser.java

@@ -26,6 +26,7 @@ import lcsb.mapviewer.annotation.cache.WebPageDownloader;
 import lcsb.mapviewer.annotation.cache.XmlSerializer;
 import lcsb.mapviewer.annotation.data.Chemical;
 import lcsb.mapviewer.annotation.data.ChemicalDirectEvidence;
+import lcsb.mapviewer.annotation.data.MeSH;
 import lcsb.mapviewer.annotation.data.Target;
 import lcsb.mapviewer.annotation.services.annotators.AnnotatorException;
 import lcsb.mapviewer.annotation.services.annotators.HgncAnnotator;
@@ -168,6 +169,9 @@ public class ChemicalParser extends CachableInterface implements IExternalServic
   @Autowired
   private ProjectDao projectDao;
 
+  @Autowired
+  private MeSHParser meshParser;
+
   /**
    * 
    */
@@ -349,7 +353,7 @@ public class ChemicalParser extends CachableInterface implements IExternalServic
           }
           List<String> list = getSuggestedQueryListWithoutCache(project, diseaseId);
           result = StringUtils.join(list, "\n");
-        } else  {
+        } else {
           result = super.refreshCacheQuery(query);
         }
       } else {
@@ -396,8 +400,15 @@ public class ChemicalParser extends CachableInterface implements IExternalServic
           result = getChemicalFromChemicalLine(lineValues, chemID);
         }
       }
+      if (result != null) {
+        MeSH mesh = meshParser.getMeSH(result.getChemicalId());
+        result.addSynonyms(mesh.getSynonyms());
+      }
+
     } catch (IOException e) {
       throw new ChemicalSearchException("ctdbase service unavailable", e);
+    } catch (AnnotatorException e) {
+      throw new ChemicalSearchException("problem with accessing mesh db", e);
     }
 
     // put them in cache