debian package script updated for new versioning system

.gitignore

-target/
-map_images/
-CellDesigner-plugin/target/
 annotation/target/
 annotation/minerva-big/
+CellDesigner-plugin/target/
 commons/target/
 comparison/target/
 console/target/
 converter/target/
 converter-CellDesigner/target/
 converter-SBGNML/target/
-*.png
-target/
+debian/src/
 debian/minerva*
 debian/src/*.sql
-*.war
 editor/target/
+map_images/
 model/target/
 model-command/target/
 pathvisio/target/
@@ -22,5 +19,8 @@ persist/target/
 quadTrees/target/
 reactome/target/
 rest-api/target/
+target/
 web/target/
 web/src/main/webapp/svnversion.txt
+*.png
+*.war

debian/create-debian-pkg.sh

 #!/bin/bash
 
+versionCompLte() {
+    [  "$1" = "`echo -e "$1\n$2" | sort -V | head -n1`" ]
+}
+
+
+versionCompLt() {
+    [ "$1" = "$2" ] && return 1 || versionCompLte $1 $2
+}
+
+
 #Where source file of the debian package should be placed
 SRC_DIR=debian/src
 
@@ -39,6 +49,9 @@ gzip $SRC_DIR/minerva.txt
 #copy configuration of logrotate
 cp debian/logrotate/* $SRC_DIR/
 
+#copy changelog file
+cp CHANGELOG $ROOT_DIR/debian/template/changelog
+
 #this variable will contain all available versions of the package
 versions=();
 
@@ -46,11 +59,12 @@ versions=();
 current_version=-1;
 
 #find all available versions
+
 for version in `ls $DB_SCHEMA_DIR | sort -V`;
 do
 	if [ -d "$DB_SCHEMA_DIR/$version" ]
 	then
-		versions[$version]=$version;
+		versions+=($version);
 		current_version=$version;
 	fi
 done
@@ -92,7 +106,7 @@ do
 			do
 				#update from version_B should contain all db changes that appeard
 				#after #version_B (so version_A must be later)
-				if [ $version_B -lt $version_A ]
+				if versionCompLt $version_B $version_A 
 				then
 					upd_file=$SRC_DIR/db_"$version_B"_to_$current_version".sql";
 					printf "\n\n-- UPDATE $version_A/$file\n\n" >>$upd_file;
@@ -159,7 +173,7 @@ echo db_0.sql /usr/share\/minerva/schema >> debian/install
 echo db_0_to_$current_version".sql" /usr/share/minerva/schema >> debian/install
 for version in ${versions[*]}
 do
-	if [ $version -ne $current_version ]
+	if [ "$version" != "$current_version" ]
 	then
 		echo db_"$version"_to_$current_version".sql" /usr/share/minerva/schema >> debian/install;
 	fi
@@ -180,3 +194,6 @@ rm debian/package.doc-base.EX
 
 #build debian package
 debuild -us -uc
+
+# remove temporary changelog
+rm $ROOT_DIR/debian/template/changelog

debian/template/changelog

-minerva (10) stable; urgency=medium
-
-  * Project info tab available for users
-  * Management of overlays in admin panel
-  * Bug fix: Visualization of text mining
-  * Bug fix: Exception when accessing non-existing project
-  * Bug fix: Zooming issue when searching for results on submaps
-  * Bug fix: Out of memory when caching a lot of data
-  * Bug fix: Corrupted drug names
-  * Bug fix: Unexpected errors when uploading layouts
-  * Bug fix: Coordinates in url
-  * Bug fix: Hiding left panel
-  * Bug fix: CellDesigner font size is processed properly
-  * Bug fix: Search by reaction id is not case sensitive
-
- -- Piotr Gawron <piotr.gawron@uni.lu>  Mon, 22 Aug 2016 13:01:16 +0200
-
-minerva (9) stable; urgency=medium
-
-  * Fix on install script of version 8 that crashed some new installations
-
- -- Piotr Gawron <piotr.gawron@uni.lu>  Wed, 29 Jun 2016 09:58:34 +0200
-
-minerva (8) stable; urgency=medium
-
-  * Micro RNA interface
-  * Toxic chemicals interdace
-  * Data sets (layouts) visualized dynamically in the browser
-  * Reverse query for drugs, chemicals, micro RNAs interfaces
-  * Small bug fixes
-
- -- Piotr Gawron <piotr.gawron@uni.lu>  Thu, 14 Apr 2016 13:03:55 +0200
-
-minerva (7) stable; urgency=low
-
-  * Initial release 
-
- -- Piotr Gawron <piotr.gawron@uni.lu>  Mon, 28 Sep 2015 10:30:53 -0400