Merge branch '499-remove-ide-specific-files-from-project' into 'master'

Resolve "remove IDE specific files from project"

See merge request !470

.classpath

-<?xml version="1.0" encoding="UTF-8"?>
-<classpath>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER"/>
-	<classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="output" path="target/classes"/>
-</classpath>

.gitignore

 annotation/minerva-big/
 builds/
-debian/src/
-debian/minerva*
-debian/src/*.sql
 map_images/
 minerva-big/
-*/target/
 web/src/main/webapp/svnversion.txt
 *.war
-/target/
 service/minerva-big/
-npm-debug.log
-converter-sbml/jsbml.log
 
+#log files
+*.log
+
+#IntelliJ files
 .idea/
 *.iml
+
+#eclipse files
+/target/
+.classpath
+.settings
+
+#debian build files
+debian/src/
+debian/minerva*
+debian/src/*.sql
+/bin/

.settings/org.eclipse.core.resources.prefs

-eclipse.preferences.version=1
-encoding/<project>=UTF-8

.settings/org.eclipse.jdt.core.prefs

-eclipse.preferences.version=1
-org.eclipse.jdt.core.compiler.problem.forbiddenReference=warning

.settings/org.eclipse.m2e.core.prefs

-activeProfiles=
-eclipse.preferences.version=1
-resolveWorkspaceProjects=true
-version=1

.settings/org.eclipse.wst.validation.prefs

-DELEGATES_PREFERENCE=delegateValidatorList
-USER_BUILD_PREFERENCE=enabledBuildValidatorListorg.eclipse.wst.wsi.ui.internal.WSIMessageValidator;
-USER_MANUAL_PREFERENCE=enabledManualValidatorListorg.eclipse.wst.wsi.ui.internal.WSIMessageValidator;
-USER_PREFERENCE=overrideGlobalPreferencesfalse
-eclipse.preferences.version=1
-override=false
-suspend=false
-vals/org.eclipse.jst.jsf.facelet.ui.FaceletHTMLValidator/global=FF01
-vals/org.eclipse.jst.jsp.core.JSPBatchValidator/global=FF01
-vals/org.eclipse.jst.jsp.core.JSPContentValidator/global=FF01
-vals/org.eclipse.jst.jsp.core.TLDValidator/global=FF01
-vals/org.eclipse.wst.dtd.core.dtdDTDValidator/global=FF01
-vals/org.eclipse.wst.html.core.HTMLValidator/global=FF01
-vals/org.eclipse.wst.wsdl.validation.wsdl/global=FF02158org.eclipse.wst.wsdl.validation.internal.eclipse.Validator
-vals/org.eclipse.wst.xml.core.xml/global=FF03
-vals/org.eclipse.wst.xsd.core.xsd/global=FF02162org.eclipse.wst.xsd.core.internal.validation.eclipse.Validator
-vals/org.eclipse.wst.xsl.core.xsl/global=FF02
-vf.version=3

CellDesigner-plugin/.classpath

-<?xml version="1.0" encoding="UTF-8"?>
-<classpath>
-	<classpathentry kind="src" output="target/classes" path="src/main/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="src" output="target/test-classes" path="src/test/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="test" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry excluding="**" kind="src" output="target/test-classes" path="src/test/resources">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="test" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry excluding="**" kind="src" output="target/classes" path="src/main/resources">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="output" path="target/classes"/>
-</classpath>

CellDesigner-plugin/.gitignore

+#eclipse files
+target
+.classpath
+.settings
+/bin/

CellDesigner-plugin/.settings/org.eclipse.core.resources.prefs

-eclipse.preferences.version=1
-encoding//src/main/java=UTF-8
-encoding//src/main/resources=UTF-8
-encoding//src/test/java=UTF-8
-encoding//src/test/resources=UTF-8
-encoding/<project>=UTF-8

CellDesigner-plugin/.settings/org.eclipse.jdt.core.prefs

-eclipse.preferences.version=1
-org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
-org.eclipse.jdt.core.compiler.compliance=1.8
-org.eclipse.jdt.core.compiler.problem.forbiddenReference=warning
-org.eclipse.jdt.core.compiler.release=disabled
-org.eclipse.jdt.core.compiler.source=1.8

CellDesigner-plugin/.settings/org.eclipse.m2e.core.prefs

-activeProfiles=
-eclipse.preferences.version=1
-resolveWorkspaceProjects=true
-version=1

annotation/.classpath

-<?xml version="1.0" encoding="UTF-8"?>
-<classpath>
-	<classpathentry kind="src" output="target/classes" path="src/main/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry excluding="**" kind="src" output="target/classes" path="src/main/resources">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="src" output="target/test-classes" path="src/test/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="test" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry excluding="**" kind="src" output="target/test-classes" path="src/test/resources">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="test" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="org.eclipse.jst.component.nondependency" value=""/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="output" path="target/classes"/>
-</classpath>

annotation/.gitignore

+#eclipse files
+target
+.classpath
+.settings
+/bin/

annotation/.settings/org.eclipse.core.resources.prefs

-eclipse.preferences.version=1
-encoding//src/main/java=UTF-8
-encoding//src/main/resources=UTF-8
-encoding//src/test/java=UTF-8
-encoding//src/test/resources=UTF-8
-encoding/<project>=UTF-8

annotation/.settings/org.eclipse.jdt.core.prefs

-eclipse.preferences.version=1
-org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
-org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
-org.eclipse.jdt.core.compiler.codegen.unusedLocal=preserve
-org.eclipse.jdt.core.compiler.compliance=1.8
-org.eclipse.jdt.core.compiler.debug.lineNumber=generate
-org.eclipse.jdt.core.compiler.debug.localVariable=generate
-org.eclipse.jdt.core.compiler.debug.sourceFile=generate
-org.eclipse.jdt.core.compiler.problem.assertIdentifier=error
-org.eclipse.jdt.core.compiler.problem.enumIdentifier=error
-org.eclipse.jdt.core.compiler.problem.forbiddenReference=warning
-org.eclipse.jdt.core.compiler.release=disabled
-org.eclipse.jdt.core.compiler.source=1.8

annotation/.settings/org.eclipse.m2e.core.prefs

-activeProfiles=
-eclipse.preferences.version=1
-resolveWorkspaceProjects=true
-version=1

annotation/.settings/org.eclipse.wst.common.component

-<?xml version="1.0" encoding="UTF-8"?><project-modules id="moduleCoreId" project-version="1.5.0">
-    <wb-module deploy-name="MapViewer-annotation">
-        <wb-resource deploy-path="/" source-path="/src/main/java"/>
-        <wb-resource deploy-path="/" source-path="/src/main/resources"/>
-    </wb-module>
-</project-modules>

annotation/.settings/org.eclipse.wst.common.project.facet.core.xml

-<?xml version="1.0" encoding="UTF-8"?>
-<faceted-project>
-  <installed facet="java" version="1.8"/>
-  <installed facet="jst.utility" version="1.0"/>
-</faceted-project>

annotation/.settings/org.eclipse.wst.validation.prefs

-disabled=06target
-eclipse.preferences.version=1

commons/.classpath

-<?xml version="1.0" encoding="UTF-8"?>
-<classpath>
-	<classpathentry kind="src" output="target/classes" path="src/main/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry excluding="**" kind="src" output="target/classes" path="src/main/resources">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="src" output="target/test-classes" path="src/test/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="test" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry excluding="**" kind="src" output="target/test-classes" path="src/test/resources">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="test" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="org.eclipse.jst.component.nondependency" value=""/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="output" path="target/classes"/>
-</classpath>