export to xml of modifications fixed (96dd9860) · Commits · minerva / core

Commit 96dd9860 authored 6 years ago by Piotr Gawron

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export to xml of modifications fixed

parent 48e20687

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1 merge request!345Resolve "Genes annotations don't show"

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converter-CellDesigner/src/main/java/lcsb/mapviewer/converter/model/celldesigner/geometry/AbstractCellDesignerAliasConverter.java 21 additions, 5 deletions

...designer/geometry/AbstractCellDesignerAliasConverter.java
converter-CellDesigner/src/main/java/lcsb/mapviewer/converter/model/celldesigner/geometry/AntisenseRnaCellDesignerAliasConverter.java 24 additions, 2 deletions

...gner/geometry/AntisenseRnaCellDesignerAliasConverter.java
converter-CellDesigner/src/main/java/lcsb/mapviewer/converter/model/celldesigner/geometry/CellDesignerAliasConverter.java 21 additions, 0 deletions

...del/celldesigner/geometry/CellDesignerAliasConverter.java
converter-CellDesigner/src/main/java/lcsb/mapviewer/converter/model/celldesigner/geometry/GeneCellDesignerAliasConverter.java 24 additions, 7 deletions

...celldesigner/geometry/GeneCellDesignerAliasConverter.java
converter-CellDesigner/src/main/java/lcsb/mapviewer/converter/model/celldesigner/geometry/ICellDesignerAliasConverter.java 10 additions, 2 deletions

...el/celldesigner/geometry/ICellDesignerAliasConverter.java
converter-CellDesigner/src/main/java/lcsb/mapviewer/converter/model/celldesigner/geometry/RnaCellDesignerAliasConverter.java 27 additions, 2 deletions

.../celldesigner/geometry/RnaCellDesignerAliasConverter.java
converter-CellDesigner/src/main/java/lcsb/mapviewer/converter/model/celldesigner/geometry/UnknownCellDesignerAliasConverter.java 1 addition, 1 deletion

...ldesigner/geometry/UnknownCellDesignerAliasConverter.java
converter-CellDesigner/src/main/java/lcsb/mapviewer/converter/model/celldesigner/species/AntisenseRnaXmlParser.java 5 additions, 11 deletions

...ter/model/celldesigner/species/AntisenseRnaXmlParser.java
converter-CellDesigner/src/main/java/lcsb/mapviewer/converter/model/celldesigner/species/GeneXmlParser.java 5 additions, 5 deletions

...r/converter/model/celldesigner/species/GeneXmlParser.java
converter-CellDesigner/src/main/java/lcsb/mapviewer/converter/model/celldesigner/species/RnaXmlParser.java 52 additions, 0 deletions

...er/converter/model/celldesigner/species/RnaXmlParser.java
converter-CellDesigner/src/main/java/lcsb/mapviewer/converter/model/celldesigner/structure/fields/CellDesignerModificationResidue.java 25 additions, 17 deletions

...ner/structure/fields/CellDesignerModificationResidue.java
converter-CellDesigner/src/test/java/lcsb/mapviewer/converter/model/celldesigner/AllCellDesignerTests.java 1 addition, 0 deletions

...er/converter/model/celldesigner/AllCellDesignerTests.java
converter-CellDesigner/src/test/java/lcsb/mapviewer/converter/model/celldesigner/CellDesignerXmlParserTest.java 0 additions, 112 deletions

...nverter/model/celldesigner/CellDesignerXmlParserTest.java
converter-CellDesigner/src/test/java/lcsb/mapviewer/converter/model/celldesigner/ComplexParserTests.java 0 additions, 57 deletions

...ewer/converter/model/celldesigner/ComplexParserTests.java
converter-CellDesigner/src/test/java/lcsb/mapviewer/converter/model/celldesigner/ModificationTest.java 256 additions, 0 deletions

...viewer/converter/model/celldesigner/ModificationTest.java
converter-CellDesigner/testFiles/modifications/antisense_rna_with_region.xml 0 additions, 0 deletions

...ner/testFiles/modifications/antisense_rna_with_region.xml
converter-CellDesigner/testFiles/modifications/gene_with_coding_region.xml 90 additions, 0 deletions

...igner/testFiles/modifications/gene_with_coding_region.xml
converter-CellDesigner/testFiles/modifications/gene_with_modification_site.xml 95 additions, 0 deletions

...r/testFiles/modifications/gene_with_modification_site.xml
converter-CellDesigner/testFiles/modifications/gene_with_regulatory_region.xml 0 additions, 0 deletions

...r/testFiles/modifications/gene_with_regulatory_region.xml
converter-CellDesigner/testFiles/modifications/gene_with_transcription_site_left.xml 0 additions, 0 deletions

...Files/modifications/gene_with_transcription_site_left.xml

with 657 additions and 221 deletions

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