non-tested alpha implementation

rest-api/src/main/java/lcsb/mapviewer/api/convert/ConvertController.java

+package lcsb.mapviewer.api.convert;
+
+import java.io.IOException;
+import java.util.List;
+import java.util.Map;
+
+import javax.servlet.ServletContext;
+import javax.xml.stream.XMLStreamException;
+
+import org.apache.log4j.Logger;
+import org.sbml.jsbml.SBMLException;
+import org.springframework.beans.factory.annotation.Autowired;
+import org.springframework.http.MediaType;
+import org.springframework.http.ResponseEntity;
+import org.springframework.util.MultiValueMap;
+import org.springframework.web.bind.annotation.CookieValue;
+import org.springframework.web.bind.annotation.PathVariable;
+import org.springframework.web.bind.annotation.RequestBody;
+import org.springframework.web.bind.annotation.RequestMapping;
+import org.springframework.web.bind.annotation.RequestMethod;
+import org.springframework.web.bind.annotation.RequestParam;
+import org.springframework.web.bind.annotation.RestController;
+
+import lcsb.mapviewer.api.BaseController;
+import lcsb.mapviewer.api.ObjectNotFoundException;
+import lcsb.mapviewer.api.QueryException;
+import lcsb.mapviewer.commands.CommandExecutionException;
+import lcsb.mapviewer.common.Configuration;
+import lcsb.mapviewer.converter.ConverterException;
+import lcsb.mapviewer.converter.InvalidInputDataExecption;
+import lcsb.mapviewer.converter.graphics.DrawingException;
+import lcsb.mapviewer.model.cache.FileEntry;
+import lcsb.mapviewer.model.map.InconsistentModelException;
+import lcsb.mapviewer.model.map.layout.InvalidColorSchemaException;
+import lcsb.mapviewer.services.SecurityException;
+
+@RestController
+public class ConvertController extends BaseController {
+  @SuppressWarnings("unused")
+  private Logger logger = Logger.getLogger(ConvertController.class);
+
+  @Autowired
+  private ConvertRestImpl convertController;
+  
+
+  @RequestMapping(value = "/convert/{fromFormat:celldesigner|sbml|sbgn}:{toFormat:celldesigner|sbml|sbgn}", 
+		  method = { RequestMethod.POST }, produces = {
+      MediaType.TEXT_PLAIN_VALUE })
+  public String convertInput(//
+	  @PathVariable(value = "fromFormat") String fromFormat, //
+	  @PathVariable(value = "toFormat") String toFormat, //
+      @RequestBody String body, //      
+      @CookieValue(value = Configuration.AUTH_TOKEN) String token //
+  ) throws SecurityException, IOException, QueryException, SBMLException, 
+  InvalidInputDataExecption, InconsistentModelException, ConverterException, XMLStreamException {    
+    return convertController.convert(token, fromFormat, toFormat, body);
+
+  }
+}
\ No newline at end of file

rest-api/src/main/resources/applicationContext-rest.xml

@@ -35,4 +35,6 @@
 	<bean id="ReferenceGenomeRestImpl" class="lcsb.mapviewer.api.genomics.ReferenceGenomeRestImpl"/>
 	<bean id="UserRestImpl" class="lcsb.mapviewer.api.users.UserRestImpl"/>
 	
+	<bean id="ConvertRestImpl" class="lcsb.mapviewer.api.convert.ConvertRestImpl"/>
+	
 </beans>
\ No newline at end of file

rest-api/src/test/java/lcsb/mapviewer/api/AllRestTests.java

@@ -5,6 +5,7 @@ import org.junit.runners.Suite;
 import org.junit.runners.Suite.SuiteClasses;
 
 import lcsb.mapviewer.api.configuration.AllConfigurationTests;
+import lcsb.mapviewer.api.convert.AllConvertTests;
 import lcsb.mapviewer.api.files.AllFileTests;
 import lcsb.mapviewer.api.genomics.AllGenomicsTests;
 import lcsb.mapviewer.api.mesh.AllMeshTests;
@@ -13,7 +14,8 @@ import lcsb.mapviewer.api.users.AllUserTests;
 
 @RunWith(Suite.class)
 @SuiteClasses({ AllConfigurationTests.class, //
-    AllFileTests.class, //
+	AllConvertTests.class, //
+	AllFileTests.class, //
     AllGenomicsTests.class, //
     AllMeshTests.class, //
     AllProjectTests.class, //

rest-api/src/test/java/lcsb/mapviewer/api/convert/AllConvertTests.java

+package lcsb.mapviewer.api.convert;
+
+import org.junit.runner.RunWith;
+import org.junit.runners.Suite;
+import org.junit.runners.Suite.SuiteClasses;
+
+@RunWith(Suite.class)
+@SuiteClasses({ ConvertRestImplTest.class })
+public class AllConvertTests {
+
+}

rest-api/src/test/java/lcsb/mapviewer/api/convert/ConvertRestImplTest.java

+package lcsb.mapviewer.api.convert;
+
+import static org.junit.Assert.assertNotNull;
+import static org.junit.Assert.assertTrue;
+
+import java.util.List;
+import java.util.Map;
+import java.util.Set;
+
+import org.apache.log4j.Logger;
+import org.junit.After;
+import org.junit.AfterClass;
+import org.junit.Before;
+import org.junit.Test;
+import org.springframework.beans.factory.annotation.Autowired;
+
+import lcsb.mapviewer.api.RestTestFunctions;
+import lcsb.mapviewer.model.map.MiriamType;
+import lcsb.mapviewer.model.map.reaction.type.StateTransitionReaction;
+import lcsb.mapviewer.model.map.species.GenericProtein;
+
+public class ConvertRestImplTest extends RestTestFunctions {
+
+  @SuppressWarnings("unused")
+  private Logger logger = Logger.getLogger(ConvertRestImplTest.class);
+
+  @Autowired
+  public ConvertRestImpl convertRestImpl;
+
+  @AfterClass
+  public static void tearDownAfterClass() throws Exception {
+  }
+
+  @Before
+  public void setUp() throws Exception {
+  }
+
+  @After
+  public void tearDown() throws Exception {
+  }
+
+
+  @Test
+  public void testCelDesigner2Sbml() throws Exception {
+    try {
+      String result = convertRestImpl.convert(token, "celldesigner", "sbml", "content");
+      assertTrue(result.length() > 0);
+    } catch (Exception e) {
+      e.printStackTrace();
+      throw e;
+    }
+  }
+  
+}