vizualization issue - center rectangle in the wrong point

converter-sbml/src/main/java/lcsb/mapviewer/converter/model/sbml/SbmlParser.java

@@ -190,11 +190,13 @@ public class SbmlParser implements IConverter {
       PolylineData line = new PolylineData();
       line.addPoint(reactantStartPoint);
       line.addPoint(center);
+      line.addPoint(center);
       reaction.getReactants().get(0).setLine(line);
     } else {
       for (Reactant reactant : reaction.getReactants()) {
         PolylineData line = new PolylineData();
         line.addPoint(reactantMergePoint);
+        line.addPoint(reactantMergePoint);
         line.addPoint(reactant.getElement().getCenter());
         reactant.setLine(line);
       }
@@ -212,12 +214,14 @@ public class SbmlParser implements IConverter {
       PolylineData line = new PolylineData();
       line.addPoint(center);
       line.addPoint(productEndPoint);
+      line.addPoint(productEndPoint);
       line.getEndAtd().setArrowType(ArrowType.FULL);
       reaction.getProducts().get(0).setLine(line);
     } else {
       for (Product product : reaction.getProducts()) {
         PolylineData line = new PolylineData();
         line.addPoint(productMergePoint);
+        line.addPoint(productMergePoint);
         line.addPoint(product.getElement().getCenter());
         line.getEndAtd().setArrowType(ArrowType.FULL);
         product.setLine(line);

converter-sbml/src/main/java/lcsb/mapviewer/converter/model/sbml/SbmlReactionParser.java

@@ -158,8 +158,10 @@ public class SbmlReactionParser {
           }
           if (minervaNode instanceof Reactant) {
             line = line.reverse();
+            line.addPoint(line.getEndPoint());
           }
           if (minervaNode instanceof Product) {
+            line.addPoint(0, line.getBeginPoint());
             ArrowTypeData atd = new ArrowTypeData();
             atd.setArrowType(ArrowType.FULL);
             line.setEndAtd(atd);