set proper apth to webapps on startup

frontend-js/package-lock.json

@@ -45,30 +45,38 @@
         "litemol": "github:dsehnal/LiteMol#a5419c696faa84530dd93acd55b747cf8136902b"
       },
       "dependencies": {
+        "ProtVista": {
+          "version": "git://github.com/davidhoksza/protvista.git#4e4bb737ba1e183291505bd25f8bae2e651ce21e",
+          "dev": true,
+          "requires": {
+            "d3": "3.5.17",
+            "file-saver": "1.3.3",
+            "jquery": "2.2.4",
+            "jszip": "3.1.4",
+            "underscore": "1.8.3"
+          },
+          "dependencies": {
+            "jquery": {
+              "version": "2.2.4",
+              "resolved": "https://registry.npmjs.org/jquery/-/jquery-2.2.4.tgz",
+              "integrity": "sha1-LInWiJterFIqfuoywUUhVZxsvwI=",
+              "dev": true
+            }
+          }
+        },
         "jquery": {
           "version": "3.3.1",
           "resolved": "https://registry.npmjs.org/jquery/-/jquery-3.3.1.tgz",
           "integrity": "sha512-Ubldcmxp5np52/ENotGxlLe6aGMvmF4R8S6tZjsP6Knsaxd/xp3Zrh50cG93lR6nPXyUFwzN3ZSOQI0wRJNdGg==",
           "dev": true
-        }
-      }
-    },
-    "ProtVista": {
-      "version": "git://github.com/davidhoksza/protvista.git#4e4bb737ba1e183291505bd25f8bae2e651ce21e",
-      "dev": true,
-      "requires": {
-        "d3": "3.5.17",
-        "file-saver": "1.3.3",
-        "jquery": "2.2.4",
-        "jszip": "3.1.4",
-        "underscore": "1.8.3"
-      },
-      "dependencies": {
-        "jquery": {
-          "version": "2.2.4",
-          "resolved": "https://registry.npmjs.org/jquery/-/jquery-2.2.4.tgz",
-          "integrity": "sha1-LInWiJterFIqfuoywUUhVZxsvwI=",
-          "dev": true
+        },
+        "litemol": {
+          "version": "github:dsehnal/LiteMol#a5419c696faa84530dd93acd55b747cf8136902b",
+          "dev": true,
+          "requires": {
+            "@types/react": "15.6.14",
+            "@types/react-dom": "15.5.7"
+          }
         }
       }
     },
@@ -2050,14 +2058,6 @@
         "immediate": "3.0.6"
       }
     },
-    "litemol": {
-      "version": "github:dsehnal/LiteMol#a5419c696faa84530dd93acd55b747cf8136902b",
-      "dev": true,
-      "requires": {
-        "@types/react": "15.6.14",
-        "@types/react-dom": "15.5.7"
-      }
-    },
     "lodash": {
       "version": "4.17.4",
       "resolved": "https://registry.npmjs.org/lodash/-/lodash-4.17.4.tgz",

web/src/main/java/lcsb/mapviewer/bean/utils/StartupBean.java

@@ -6,6 +6,8 @@ import javax.annotation.PostConstruct;
 import javax.faces.bean.ApplicationScoped;
 import javax.faces.bean.ManagedBean;
 import javax.faces.bean.ManagedProperty;
+import javax.faces.context.FacesContext;
+import javax.servlet.ServletContext;
 
 import org.apache.log4j.Logger;
 
@@ -64,6 +66,10 @@ public class StartupBean {
   @PostConstruct
   public void init() {
     logger.debug("Application startup script starts");
+    ServletContext servletContext = (ServletContext) FacesContext.getCurrentInstance().getExternalContext()
+        .getContext();
+    Configuration.setWebAppDir(servletContext.getRealPath(".") + "../");
+
     setInterruptedProjectsStatuses();
     modifyXFrameDomain();
     removeInterruptedReferenceGenomeDownloads();