reaction contain information about reaction type

frontend-js/src/main/js/map/data/Reaction.js

@@ -106,7 +106,8 @@ Reaction.prototype.update = function(javaObject) {
   this.setDescription(javaObject.notes);
   this.setOther(javaObject.other);
   this.setReferences(javaObject.references);
-  
+  this.setType(javaObject.type);
+
   if (javaObject.reactants !== "") {
     this.setReactants(javaObject.reactants.split(","));
   } else {
@@ -122,7 +123,7 @@ Reaction.prototype.update = function(javaObject) {
   } else {
     this.setModifiers([]);
   }
-  
+
   this.setHierarchyVisibilityLevel(javaObject.hierarchyVisibilityLevel);
   this.setIsComplete(true);
 };
@@ -151,15 +152,15 @@ Reaction.prototype.setSymbol = function(symbol) {
   this._symbol = symbol;
 };
 
-Reaction.prototype.getAbbreviation= function() {
+Reaction.prototype.getAbbreviation = function() {
   return this._abbreviation;
 };
 
-Reaction.prototype.setAbbreviation= function(abbreviation) {
+Reaction.prototype.setAbbreviation = function(abbreviation) {
   this._abbreviation = abbreviation;
 };
 
-Reaction.prototype.getFormula= function() {
+Reaction.prototype.getFormula = function() {
   return this._formula;
 };
 
@@ -167,7 +168,7 @@ Reaction.prototype.setFormula = function(formula) {
   this._formula = formula;
 };
 
-Reaction.prototype.getMechanicalConfidenceScore= function() {
+Reaction.prototype.getMechanicalConfidenceScore = function() {
   return this._mechanicalConfidenceScore;
 };
 
@@ -175,7 +176,7 @@ Reaction.prototype.setMechanicalConfidenceScore = function(mechanicalConfidenceS
   this._mechanicalConfidenceScore = mechanicalConfidenceScore;
 };
 
-Reaction.prototype.getLowerBound= function() {
+Reaction.prototype.getLowerBound = function() {
   return this._lowerBound;
 };
 
@@ -183,7 +184,7 @@ Reaction.prototype.setLowerBound = function(lowerBound) {
   this._lowerBound = lowerBound;
 };
 
-Reaction.prototype.getUpperBound= function() {
+Reaction.prototype.getUpperBound = function() {
   return this._upperBound;
 };
 
@@ -195,7 +196,7 @@ Reaction.prototype.setGeneProteinReaction = function(geneProteinReaction) {
   this._geneProteinReaction = geneProteinReaction;
 };
 
-Reaction.prototype.getGeneProteinReaction= function() {
+Reaction.prototype.getGeneProteinReaction = function() {
   return this._geneProteinReaction;
 };
 
@@ -203,7 +204,7 @@ Reaction.prototype.setSubsystem = function(subsystem) {
   this._subsystem = subsystem;
 };
 
-Reaction.prototype.getSubsystem= function() {
+Reaction.prototype.getSubsystem = function() {
   return this._subsystem;
 };
 
@@ -211,7 +212,7 @@ Reaction.prototype.setSynonyms = function(synonyms) {
   this._synonyms = synonyms;
 };
 
-Reaction.prototype.getSynonyms= function() {
+Reaction.prototype.getSynonyms = function() {
   return this._synonyms;
 };
 
@@ -219,7 +220,7 @@ Reaction.prototype.setDescription = function(description) {
   this._description = description;
 };
 
-Reaction.prototype.getDescription= function() {
+Reaction.prototype.getDescription = function() {
   return this._description;
 };
 
@@ -255,6 +256,14 @@ Reaction.prototype.getModifiers = function() {
   return this._modifiers;
 };
 
+Reaction.prototype.setType = function(type) {
+  this._type = type;
+};
+
+Reaction.prototype.getType = function() {
+  return this._type;
+};
+
 Reaction.prototype.getOther = function(type) {
   if (this._other !== undefined) {
     return this._other[type];

frontend-js/src/test/js/map/data/Reaction-test.js

@@ -17,30 +17,13 @@ describe('Reaction', function() {
   });
 
   it("contructor", function() {
-    var javaObject = {
-      lines : [ {
-        start : Object,
-        end : Object,
-        type : "START"
-      }, {
-        start : Object,
-        end : Object,
-        type : "END"
-      }, {
-        start : Object,
-        end : Object,
-        type : "MIDDLE"
-      } ],
-      modelId : 319,
-      idObject : "13178",
-      centerPoint : {
-        x : 10,
-        y : 12,
-      },
-    };
-    var reaction = new Reaction(javaObject);
-    assert.ok(reaction);
-    assert.ok(reaction.getId());
+    return ServerConnector.readFile("testFiles/reaction.json").then(function(content) {
+      var javaObject = JSON.parse(content);
+      var reaction = new Reaction(javaObject);
+      assert.ok(reaction);
+      assert.ok(reaction.getId());
+      assert.ok(reaction.getType());
+    });
   });
   it("constructor from invalid", function() {
     var javaObject = {

frontend-js/testFiles/reaction.json

+ {
+  "modelId" : 15781,
+  "reactants" : "329166",
+  "reactionId" : "re21",
+  "id" : 153508,
+  "type" : "State transition",
+  "lines" : [ {
+    "start" : {
+      "x" : 129.00000000000003,
+      "y" : 269.9853478599471
+    },
+    "end" : {
+      "x" : 217.3857151822324,
+      "y" : 271.4614610007049
+    },
+    "type" : "START"
+  }, {
+    "start" : {
+      "x" : 217.3857151822324,
+      "y" : 271.4614610007049
+    },
+    "end" : {
+      "x" : 217.98919008325365,
+      "y" : 297.73178548394236
+    },
+    "type" : "MIDDLE"
+  }, {
+    "start" : {
+      "x" : 218.17291548409574,
+      "y" : 305.7296755167626
+    },
+    "end" : {
+      "x" : 218.77639038511697,
+      "y" : 332.0
+    },
+    "type" : "END"
+  } ],
+  "modifiers" : "",
+  "centerPoint" : {
+    "x" : 218.0810527836747,
+    "y" : 301.7307305003525
+  },
+  "products" : "329171"
+} 
\ No newline at end of file