when hgnc annotator uses element name, only first part before whitespace is...

when hgnc annotator uses element name, only first part before whitespace is processed as an identifier

annotation/src/main/java/lcsb/mapviewer/annotation/services/annotators/HgncAnnotator.java

@@ -237,17 +237,17 @@ public class HgncAnnotator extends ElementAnnotator implements IExternalService
                   }
                 }
 
-							}
-						}
-					}
-				}
-            } catch (WrongResponseCodeIOException e) {
-              logger.warn(prefix + "Cannot find information for element.");
-			} catch (Exception e) {
-				throw new AnnotatorException(e);
-			}
-		}
-	}
+              }
+            }
+          }
+        }
+      } catch (WrongResponseCodeIOException e) {
+        logger.warn(prefix + "Cannot find information for element.");
+      } catch (Exception e) {
+        throw new AnnotatorException(e);
+      }
+    }
+  }
 
   /**
    * Creates query url for given {@link MiriamType#HGNC} identifier.
@@ -265,10 +265,12 @@ public class HgncAnnotator extends ElementAnnotator implements IExternalService
    *
    * @param name
    *          {@link MiriamType#HGNC_SYMBOL}
-   * @return url to restful api webpage for given hgnc symbol
+   * @return url to restful API web page for given HGNC symbol
    */
   private String getHgncNameUrl(String name) {
-    return REST_API_URL + "symbol/" + name;
+    String hgncSymbol = "" + name;
+    hgncSymbol = hgncSymbol.split("\\s+")[0];
+    return REST_API_URL + "symbol/" + hgncSymbol;
   }
 
   /**
@@ -304,34 +306,34 @@ public class HgncAnnotator extends ElementAnnotator implements IExternalService
       } else {
         Node entry = getNode("doc", resultNode.getChildNodes());
 
-				NodeList list = entry.getChildNodes();
-				for (int i = 0; i < list.getLength(); i++) {
-					Node node = list.item(i);
-					if (node.getNodeType() == Node.ELEMENT_NODE) {
-						if (node.getNodeName().equals("arr")) {
-							String type = getNodeAttr("name", node);
-							if (type.equals("uniprot_ids")) {
-								NodeList uniprotList = node.getChildNodes();
-								for (int j = 0; j < uniprotList.getLength(); j++) {
-									Node uniprotNode = uniprotList.item(j);
-									if (uniprotNode.getNodeType() == Node.ELEMENT_NODE) {
-										if (uniprotNode.getNodeName().equals("str")) {
-											result.add(createMiriamData(MiriamType.UNIPROT, uniprotNode.getTextContent()));
-										}
-									}
-								}
-							}
-						}
-					}
-				}
-			}
-			return result;
-        } catch (WrongResponseCodeIOException e) {
-          logger.warn("No HGNC data found for id: "+miriamData);
-          return new ArrayList<>();
-        } catch (Exception e) {
-			throw new AnnotatorException(e);
-		}
+        NodeList list = entry.getChildNodes();
+        for (int i = 0; i < list.getLength(); i++) {
+          Node node = list.item(i);
+          if (node.getNodeType() == Node.ELEMENT_NODE) {
+            if (node.getNodeName().equals("arr")) {
+              String type = getNodeAttr("name", node);
+              if (type.equals("uniprot_ids")) {
+                NodeList uniprotList = node.getChildNodes();
+                for (int j = 0; j < uniprotList.getLength(); j++) {
+                  Node uniprotNode = uniprotList.item(j);
+                  if (uniprotNode.getNodeType() == Node.ELEMENT_NODE) {
+                    if (uniprotNode.getNodeName().equals("str")) {
+                      result.add(createMiriamData(MiriamType.UNIPROT, uniprotNode.getTextContent()));
+                    }
+                  }
+                }
+              }
+            }
+          }
+        }
+      }
+      return result;
+    } catch (WrongResponseCodeIOException e) {
+      logger.warn("No HGNC data found for id: " + miriamData);
+      return new ArrayList<>();
+    } catch (Exception e) {
+      throw new AnnotatorException(e);
+    }
   }
 
   /**