unit test refactor

converter-sbml/src/test/java/lcsb/mapviewer/converter/model/sbml/SbmlExporterTest.java

@@ -52,10 +52,14 @@ import lcsb.mapviewer.model.map.species.field.Residue;
 public class SbmlExporterTest {
   Logger logger = Logger.getLogger(SbmlExporterTest.class);
   SbmlParser parser = new SbmlParser();
-  SbmlExporter exporter = new SbmlExporter();
+  SbmlExporter exporter;
 
   ModelComparator comparator = new ModelComparator();
 
+  public SbmlExporterTest() {
+    exporter = new SbmlExporter();
+  }
+
   @Test
   public void testExportCompartment() throws Exception {
     Model model = getModelAfterSerializing("testFiles/layoutExample/CompartmentGlyph_Example_level2_level3.xml");
@@ -443,12 +447,7 @@ public class SbmlExporterTest {
   @Test
   public void testExportProteinState() throws Exception {
     Model model = createEmptyModel();
-    GenericProtein element = new GenericProtein("id");
-    element.setName("test name");
-    element.setX(10);
-    element.setWidth(10);
-    element.setY(10);
-    element.setHeight(10);
+    GenericProtein element = createProtein();
     element.setStructuralState("xxx");
     model.addElement(element);
     Model deserializedModel = getModelAfterSerializing(model);
@@ -459,12 +458,7 @@ public class SbmlExporterTest {
   @Test
   public void testExportPositionToCompartment() throws Exception {
     Model model = createEmptyModel();
-    GenericProtein element = new GenericProtein("id");
-    element.setName("test name");
-    element.setX(10);
-    element.setWidth(10);
-    element.setY(10);
-    element.setHeight(10);
+    GenericProtein element = createProtein();
     element.setPositionToCompartment(PositionToCompartment.INSIDE);
     model.addElement(element);
     Model deserializedModel = getModelAfterSerializing(model);
@@ -535,12 +529,7 @@ public class SbmlExporterTest {
   @Test
   public void testMultiExtensionTypeDefinition() throws Exception {
     Model model = createEmptyModel();
-    GenericProtein element = new GenericProtein("id");
-    element.setName("test name");
-    element.setX(10);
-    element.setWidth(10);
-    element.setY(10);
-    element.setHeight(10);
+    GenericProtein element = createProtein();
     model.addElement(element);
     org.sbml.jsbml.Model sbmlModel = exporter.toSbmlDocument(model).getModel();
 
@@ -585,12 +574,7 @@ public class SbmlExporterTest {
   @Test
   public void testExportResidue() throws Exception {
     Model model = createEmptyModel();
-    GenericProtein element = new GenericProtein("id");
-    element.setName("test name");
-    element.setX(10);
-    element.setWidth(10);
-    element.setY(10);
-    element.setHeight(10);
+    GenericProtein element = createProtein();
     Residue mr = new Residue("x1");
     mr.setName("217U");
     mr.setState(ModificationState.PHOSPHORYLATED);
@@ -614,6 +598,16 @@ public class SbmlExporterTest {
 
   }
 
+  private GenericProtein createProtein() {
+    GenericProtein element = new GenericProtein("id");
+    element.setName("test name");
+    element.setX(10);
+    element.setWidth(10);
+    element.setY(10);
+    element.setHeight(10);
+    return element;
+  }
+
   @Test
   public void testExportNotes() throws Exception {
     Model model = createEmptyModel();
@@ -623,5 +617,4 @@ public class SbmlExporterTest {
     assertEquals("Notes weren't exported/imported properly", model.getNotes(), deserializedModel.getNotes());
 
   }
-
 }