Merge branch...

Merge branch '646-start-and-end-of-curvesegment-in-listofspeciesreferenceglyphs-in-sbml-are-wrong' into 'master'

Resolve "start and end of curveSegment in listOfSpeciesReferenceGlyphs in SBML are wrong"

Closes #646

See merge request !592

converter-sbml/src/main/java/lcsb/mapviewer/converter/model/sbml/reaction/SbmlReactionExporter.java

@@ -284,7 +284,7 @@ public class SbmlReactionExporter extends SbmlBioEntityExporter<Reaction, org.sb
   private SpeciesReferenceGlyph createNodeGlyph(ReactionGlyph reactionGlyph, ReactionNode node) {
     SpeciesReferenceGlyph reactantGlyph = reactionGlyph.createSpeciesReferenceGlyph("node_" + getNextId());
     reactantGlyph.setSpeciesGlyph(speciesExporter.getSbmlGlyphByElementId(node.getElement().getElementId()).getId());
-    reactantGlyph.setCurve(createCurve(node, false));
+    reactantGlyph.setCurve(createCurve(node, node instanceof Reactant));
     reactantGlyph.setSpeciesReference(speciesReferenceByReactionNode.get(node));
     return reactantGlyph;
   }

converter-sbml/src/main/java/lcsb/mapviewer/converter/model/sbml/reaction/SbmlReactionParser.java

@@ -157,6 +157,8 @@ public class SbmlReactionParser extends SbmlBioEntityParser {
                 + " in reaction " + reactionWithLayout.getElementId());
           }
           if (minervaNode instanceof Reactant) {
+            //in SBML line goes from reaction to reactant
+            line = line.reverse();
             if (reactionWithLayout.isReversible()) {
               line.getBeginAtd().setArrowType(ArrowType.FULL);
             }