debug added

annotation/src/main/java/lcsb/mapviewer/annotation/services/MiRNAParser.java

@@ -249,44 +249,33 @@ public class MiRNAParser extends CachableInterface implements IExternalService {
    *           thrown when there is a problem with accessing mirna data file
    */
   private InputStream getSourceInputStream() throws IOException {
+    new Exception().printStackTrace();
     if (this.sourceInputStream == null) {
       this.sourceInputStream = new ByteArrayOutputStream();
+
       if (!bigFileCache.isCached(URL_SOURCE_DATABASE)) {
-        logger.debug("downloading xls file with mirna");
         try {
           bigFileCache.downloadFile(URL_SOURCE_DATABASE, false, new IProgressUpdater() {
             @Override
             public void setProgress(double progress) {
-              logger.debug("Progress: " + progress);
             }
           });
         } catch (URISyntaxException e) {
           throw new IOException("Problem with downloading file: " + URL_SOURCE_DATABASE, e);
         }
-        logger.debug("File downloaded");
-      } else {
-        logger.debug("xls file with mirna in cache");
       }
-      logger.debug("breakpoint 1");
       String filename = bigFileCache.getAbsolutePathForFile(URL_SOURCE_DATABASE);
-      logger.debug("breakpoint 2");
       byte[] buffer = new byte[BUFFER_SIZE];
-      logger.debug("breakpoint 3");
       int len;
-      logger.debug("breakpoint 4");
       InputStream stream = new FileInputStream(new File(filename));
-      logger.debug("breakpoint 5 " + new File(filename).length());
       try {
         while ((len = stream.read(buffer)) > -1) {
-          logger.debug("breakpoint 6 " + len);
           this.sourceInputStream.write(buffer, 0, len);
         }
       } finally {
         stream.close();
       }
-      logger.debug("breakpoint 7");
       this.sourceInputStream.flush();
-      logger.debug("breakpoint 8");
     }
     return new ByteArrayInputStream(sourceInputStream.toByteArray());
   }