missing methods added

converter-CellDesigner/src/test/java/lcsb/mapviewer/converter/model/celldesigner/annotation/RestAnnotationParserTest.java

@@ -411,6 +411,12 @@ public class RestAnnotationParserTest extends CellDesignerTestFunctions {
 					// TODO Auto-generated method stub
 					return 0;
 				}
+
+				@Override
+				public String getStringType() {
+					// TODO Auto-generated method stub
+					return null;
+				}
 			});
 			fail("Exception expected");
 		} catch (NotImplementedException e) {

model/src/main/java/lcsb/mapviewer/model/map/AnnotatedObject.java

@@ -126,4 +126,13 @@ public interface AnnotatedObject extends Serializable {
 	void setName(String name);
 
 	int getId();
+	
+
+	/**
+	 * Return human readable {@link String} representing class.
+	 * 
+	 * @return human readable {@link String} representing class
+	 */
+	public abstract String getStringType();
+	
 }

model/src/main/java/lcsb/mapviewer/model/map/compartment/OvalCompartment.java

@@ -38,6 +38,11 @@ public class OvalCompartment extends Compartment {
 		super(original);
 	}
 
+	public OvalCompartment(String elementId) {
+		super();
+		setElementId(elementId);
+	}
+
 	@Override
 	public OvalCompartment copy() {
 		if (this.getClass() == OvalCompartment.class) {

model/src/main/java/lcsb/mapviewer/model/map/reaction/Reaction.java

@@ -402,7 +402,7 @@ public class Reaction implements AnnotatedObject {
 	 * @return short string describing type of the reaction
 	 */
 	public String getStringType() {
-		throw new NotImplementedException();
+		return "Generic Reaction";
 	}
 
 	/**

model/src/main/java/lcsb/mapviewer/model/map/species/Element.java

@@ -1058,13 +1058,6 @@ public abstract class Element implements AnnotatedObject, Serializable {
 		synonyms.add(synonym);
 	}
 
-	/**
-	 * Return human readable {@link String} representing class.
-	 * 
-	 * @return human readable {@link String} representing class
-	 */
-	public abstract String getStringType();
-
 	/**
 	 * @return the dataMining
 	 * @see #dataMining