unused method removed

annotation/src/main/java/lcsb/mapviewer/annotation/services/annotators/EnsemblAnnotator.java

@@ -238,32 +238,6 @@ public class EnsemblAnnotator extends ElementAnnotator implements IExternalServi
     }
   }
 
-  /**
-   * Converts {@link MiriamType#ENSEMBL} identifier into {@link MiriamType#ENTREZ}
-   * identifier.
-   * 
-   * @param miriamData
-   *          {@link MiriamData} with {@link MiriamType#ENSEMBL} identifier
-   * @return {@link MiriamData} with {@link MiriamType#ENTREZ} or null if such
-   *         identifier doesn't exists
-   * @throws AnnotatorException
-   *           thrown when there was problem with accessing external database or
-   *           any other unknown problem
-   */
-  public MiriamData ensemblIdToEntrezId(MiriamData miriamData) throws AnnotatorException {
-    if (!MiriamType.ENSEMBL.equals(miriamData.getDataType())) {
-      throw new InvalidArgumentException("Only " + MiriamType.ENSEMBL + " identifier is accepted as an input");
-    }
-    GenericProtein proteinAlias = new GenericProtein("id");
-    annotateElement(proteinAlias, miriamData, "");
-    for (MiriamData md : proteinAlias.getMiriamData()) {
-      if (MiriamType.ENTREZ.equals(md.getDataType())) {
-        return md;
-      }
-    }
-    return null;
-  }
-
   @Override
   protected WebPageDownloader getWebPageDownloader() {
     return super.getWebPageDownloader();

annotation/src/test/java/lcsb/mapviewer/annotation/services/annotators/EnsemblAnnotatorTest.java

@@ -241,45 +241,6 @@ public class EnsemblAnnotatorTest extends AnnotationTestFunctions {
     }
   }
 
-  @Test
-  public void testEnsemblToEntrez() throws Exception {
-    try {
-      MiriamData ensembl = new MiriamData(MiriamType.ENSEMBL, "ENSG00000154930");
-      MiriamData entrez = ensemblAnnotator.ensemblIdToEntrezId(ensembl);
-      assertEquals(new MiriamData(MiriamType.ENTREZ, "84532", EnsemblAnnotator.class), entrez);
-
-    } catch (Exception e) {
-      e.printStackTrace();
-      throw e;
-    }
-  }
-
-  @Test
-  public void testInvalidEnsemblToEntrez() throws Exception {
-    try {
-      MiriamData ensembl = new MiriamData(MiriamType.WIKIPEDIA, "ENSG00000154930");
-      ensemblAnnotator.ensemblIdToEntrezId(ensembl);
-      fail("Exception expected");
-    } catch (InvalidArgumentException e) {
-    } catch (Exception e) {
-      e.printStackTrace();
-      throw e;
-    }
-  }
-
-  @Test
-  public void testEnsemblToEntrez2() throws Exception {
-    try {
-      MiriamData ensembl = new MiriamData(MiriamType.ENSEMBL, "ENSRNOG00000050619");
-      MiriamData entrez = ensemblAnnotator.ensemblIdToEntrezId(ensembl);
-      assertNull(entrez);
-
-    } catch (Exception e) {
-      e.printStackTrace();
-      throw e;
-    }
-  }
-
   @Test
   public void testAnnotateWhenEntrezReturnWrongResponse() throws Exception {
     WebPageDownloader downloader = ensemblAnnotator.getWebPageDownloader();