Commits · 605b2066a431051895fbc51e74dfabb0fc0f31ab · minerva / core

Nov 20, 2017
- allow filtering by protein class (that is super class for all types of proteins) · 605b2066
  Piotr Gawron authored 7 years ago
  
  605b2066
- unit test shouldn';t log to file · 801c885c
  Piotr Gawron authored 7 years ago
  
  801c885c
Oct 26, 2017
- basic plugin interface · 675dfe89
  Piotr Gawron authored 7 years ago
  
  675dfe89
Oct 17, 2017
- verify annotations dialog implemented · 389369e3
  Piotr Gawron authored 7 years ago
  
  389369e3
- user API for updating user privileges · 92c7804e
  Piotr Gawron authored 7 years ago
  
  92c7804e
- organizing imports · bfbaeaf2
  Piotr Gawron authored 7 years ago
  
  bfbaeaf2
- overview images moved to project from top model · e1ef9be1
  Piotr Gawron authored 7 years ago
  
  e1ef9be1
- model version moved to project · 0d44e22a
  Piotr Gawron authored 7 years ago
  
  0d44e22a
Sep 26, 2017
- verify annotations dialog implemented · 1d1e8303
  Piotr Gawron authored 7 years ago
  
  1d1e8303
Sep 25, 2017
- build-deploy fixed on linux · aadf87c8
  Piotr Gawron authored 7 years ago
  
  aadf87c8
Aug 09, 2017
- organizing imports · 390326a9
  Piotr Gawron authored 7 years ago
  
  390326a9
- overview images moved to project from top model · ee2fc09b
  Piotr Gawron authored 7 years ago
  
  ee2fc09b
Aug 08, 2017
- model version moved to project · 7e7f83a6
  Piotr Gawron authored 7 years ago
  
  7e7f83a6
Aug 01, 2017
- warnings removal · dd1786e8
  Piotr Gawron authored 7 years ago
  
  dd1786e8
Jul 25, 2017
- simple upload uses different color then min/max value of the overlay · 3ab57631
  Piotr Gawron authored 7 years ago
  
  3ab57631
Jun 29, 2017
- export to png works for semantic zoom · 7b8778b7
  Piotr Gawron authored 7 years ago
  
  7b8778b7
Jun 28, 2017
- unnecessary casting removed · cc1a2c3f
  Piotr Gawron authored 7 years ago
  
  cc1a2c3f
- Model.getAnnotatedObejcts renamed to getBioEntities · 7a2352d1
  Piotr Gawron authored 7 years ago
  
  7a2352d1
- hierarchi is not influenced by previously set visibility levels · 8abcb6a4
  Piotr Gawron authored 7 years ago
  
  8abcb6a4
- semantic zooming and hierarchy visualizaion are unified on the model level · 05944698
  Piotr Gawron authored 7 years ago
  
  05944698
Jun 26, 2017
- AnnotatedObject renamed to BioEntity · d09f5464
  Piotr Gawron authored 7 years ago
  
  d09f5464
Jun 20, 2017
- copying adds information about comaprtments properly · e5bcb7f4
  Piotr Gawron authored 7 years ago
  
  e5bcb7f4
Jun 15, 2017
- Added dummy files to fit class paths and modified parent .classpath · 9de1f149
  David Hoksza authored 7 years ago
  
  9de1f149
Oct 27, 2016
- issue #10 - sbgn format moved from model to project · cff9d812
  Piotr Gawron authored 8 years ago
  
  cff9d812
- model warnings moved to project (issue #9) · 24d6947d
  Piotr Gawron authored 8 years ago
  
  24d6947d
Oct 25, 2016
- fix on export to image · dddbd3f8
  Piotr Gawron authored 8 years ago
  
  issue #46 solved
  dddbd3f8
- javadocs · f36820f1
  Piotr Gawron authored 8 years ago
  
  f36820f1
Oct 24, 2016

work in progress - overlay colors are framework parameters · 668e2a0e

Piotr Gawron authored 8 years ago

there are two type of overlay colors:
* user scope (every user account have custom color schema)
* system scope used when user colors are not defined

668e2a0e

Oct 11, 2016
- not compiling work in progress ;/ · 243751d7
  Piotr Gawron authored 8 years ago
  
  243751d7
Oct 08, 2016
- test coverage for model · 2c35221c
  piotr.gawron authored 8 years ago
  
  2c35221c
Oct 07, 2016
- fix on hierarchical algorithm and compartments · 1312cc34
  piotr.gawron authored 8 years ago
  
  1312cc34
Oct 06, 2016
- Element.parent property removed · a9e3fb40
  piotr.gawron authored 8 years ago
  
  a9e3fb40
Oct 05, 2016
- renaming of model structures + javadoc update · ec4e94be
  piotr.gawron authored 8 years ago
  
  ec4e94be
- model javadoc added and structure refactoried · f8f4a66f
  piotr.gawron authored 8 years ago
  
  f8f4a66f
Oct 04, 2016
- polishing distinction betwen model and celldesigner parser · a18fbfa6
  piotr.gawron authored 8 years ago
  
  a18fbfa6
Oct 03, 2016
- base refactoring finsihed · cd8d1eb1
  piotr.gawron authored 8 years ago
  
  classes renamed to species (there are no aliases anymore) database data about annotators cleared
  cd8d1eb1
- model and db refactoried, almost all test pass · 6db1fa6f
  piotr.gawron authored 8 years ago
  
  6db1fa6f
Oct 01, 2016
- all clases compile · e367d4be
  piotr.gawron authored 8 years ago
  
  e367d4be
Sep 30, 2016
- cell designer structures moved to celldesigner module, in progress · d357d2b2
  piotr.gawron authored 8 years ago
  
  d357d2b2
Sep 29, 2016

refactoring · acd025b3

piotr.gawron authored 8 years ago

command tests fixed, converter tests fixed and some pathvisio tests
fixed

acd025b3