Commits · 8ab50bcc160eefc4828fa253c396abf3647b7fd6 · minerva / core · GitLab

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Oct 28, 2016
- additional tests for recon annotator · 8ab50bcc
  Piotr Gawron authored 8 years ago
  
  8ab50bcc
- processing of cog and kegg orthologs added · 8bc9b785
  Piotr Gawron authored 8 years ago
  
  8bc9b785
Oct 27, 2016
- unnecessary code from biocompendium removed and tests added · 90356704
  Piotr Gawron authored 8 years ago
  
  90356704
- model warnings moved to project (issue #9 ) · 24d6947d
  Piotr Gawron authored 8 years ago
  
  24d6947d
Oct 26, 2016
- chembl introduced references for molecules (issue #31 ) · 425a7c5a
  Piotr Gawron authored 8 years ago
  
  425a7c5a
Oct 25, 2016
- javadocs · f36820f1
  Piotr Gawron authored 8 years ago
  
  f36820f1
Oct 24, 2016
- update on pmc (pubmed) connector · 0e7c9f27
  Piotr Gawron authored 8 years ago
  
  0e7c9f27
- fix on chembl api connector (new chembl api) · 19e27c2d
  Piotr Gawron authored 8 years ago
  
  19e27c2d
Oct 10, 2016
- mesh parser refresh http queries properly · d5809d4c
  piotr.gawron authored 8 years ago
  
  d5809d4c
- hgnc annotator coverage tests · 839c5921
  piotr.gawron authored 8 years ago
  
  839c5921
- simplifying structures · 433d6507
  piotr.gawron authored 8 years ago
  
  433d6507
Oct 06, 2016
- fix on tests · 1fd9d3e0
  piotr.gawron authored 8 years ago
  
  1fd9d3e0
Oct 05, 2016
- renaming of model structures + javadoc update · ec4e94be
  piotr.gawron authored 8 years ago
  
  ec4e94be
- model javadoc added and structure refactoried · f8f4a66f
  piotr.gawron authored 8 years ago
  
  f8f4a66f
Oct 04, 2016
- polishing distinction betwen model and celldesigner parser · a18fbfa6
  piotr.gawron authored 8 years ago
  
  a18fbfa6
Oct 03, 2016
- base refactoring finsihed · cd8d1eb1
  piotr.gawron authored 8 years ago
  
  classes renamed to species (there are no aliases anymore) database data about annotators cleared
  cd8d1eb1
- old CD structures don't refer to db anymore · ad998297
  piotr.gawron authored 8 years ago
  
  ad998297
- model and db refactoried, almost all test pass · 6db1fa6f
  piotr.gawron authored 8 years ago
  
  6db1fa6f
Sep 30, 2016
- cell designer structures moved to celldesigner module, in progress · d357d2b2
  piotr.gawron authored 8 years ago
  
  d357d2b2
- annotation tests pass · 27e18a41
  piotr.gawron authored 8 years ago
  
  27e18a41
Sep 29, 2016
- fix on issu #44 from main branch · fb7474d0
  piotr.gawron authored 8 years ago
  
  fb7474d0
- proper path to webapps is setup during application startup · 587b45dc
  piotr.gawron authored 8 years ago
  
  587b45dc
- big file that is cached returns proper path to a local file · 5ffe0b3b
  piotr.gawron authored 8 years ago
  
  5ffe0b3b
Sep 28, 2016

partial working new model: · af954491

piotr.gawron authored 8 years ago

model refactoried, celldesigner parser passes tests

the rest stil to be done

af954491

Sep 26, 2016
- whitespace characters · 2e02f011
  piotr.gawron authored 8 years ago
  
  2e02f011
- temp commit - species alias is abstract and there are specific alias · 0eff3a99
  piotr.gawron authored 8 years ago
  
  classes for all species
  0eff3a99
Sep 23, 2016
- temp commit · 3a1b80c5
  piotr.gawron authored 8 years ago
  
  SpeciesAlias implements AnnotatedObject and Element doesn't most of the tests pass
  3a1b80c5
- fix on drugbank web changes · 3fa93fd3
  piotr.gawron authored 8 years ago
  
  3fa93fd3
- fix on drubank web change · f284b3b3
  piotr.gawron authored 8 years ago
  
  f284b3b3
Sep 22, 2016
- test · 7314bddf
  piotr.gawron authored 8 years ago
  
  7314bddf
Sep 21, 2016
- test coverage for chembl parser · 63926f60
  piotr.gawron authored 8 years ago
  
  63926f60
Sep 20, 2016
- tests for taxonomy backend · eea1ca55
  piotr.gawron authored 8 years ago
  
  eea1ca55
- test of biocompendium that don't pass (because of issue with · 9de6e722
  piotr.gawron authored 8 years ago
  
  biocompendium) are turned off
  9de6e722
- new lines issue · 998c0537
  piotr.gawron authored 8 years ago
  
  998c0537
Sep 16, 2016
- tests added for pubmed parser · 8a9ea56d
  piotr.gawron authored 8 years ago
  
  8a9ea56d
Sep 13, 2016
- refactoring of getting data for pubmed · c87c68aa
  Piotr Gawron authored 8 years ago
  
  c87c68aa
- new Exception when there is a problem with searching for pubmed data · 2a37d7b7
  Piotr Gawron authored 8 years ago
  
  2a37d7b7
- model annotator test fix · b170037d
  Piotr Gawron authored 8 years ago
  
  b170037d
Sep 09, 2016
- some tests for ModelAnnotator · 523fea44
  Piotr Gawron authored 8 years ago
  
  523fea44
- some test coverage for biocompendium annotator · 89f3f758
  Piotr Gawron authored 8 years ago
  
  89f3f758