Commits · 9a23644251b16ddb82ca5243e1dcd4bb87402282 · minerva / core · GitLab

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Aug 27, 2018
- NotImplementedException should extend Error; some errors changed into warnings · 9a236442
  Piotr Gawron authored 6 years ago
  
  9a236442
Aug 23, 2018
- export to celldesigner with undefined units in kinetics didn't work · 6fb44960
  Piotr Gawron authored 6 years ago
  
  6fb44960
Apr 20, 2018
- when exporting notes to sbml, the notes string is escaped first · a9740fef
  Piotr Gawron authored 6 years ago
  
  a9740fef
Mar 30, 2018
- information about reaction line added that connects products and reactants · 4b6b4c90
  Piotr Gawron authored 7 years ago
  
  4b6b4c90
- stub unit test removed · 22b50def
  Piotr Gawron authored 7 years ago
  
  22b50def
- when importing data from sbml with layout define default text point for compartments properly · 5d0bc67e
  Piotr Gawron authored 7 years ago
  
  5d0bc67e
- elements with the same compartment are considered as a single sbml element · 00276951
  Piotr Gawron authored 7 years ago
  
  00276951
Mar 20, 2018
- default colors added · 3136d0b6
  Piotr Gawron authored 7 years ago
  
  3136d0b6
- additional mapping for reactions and modifiers · b2b440df
  Piotr Gawron authored 7 years ago
  
  b2b440df
- self reactions are layouted properly · 56cf1072
  Piotr Gawron authored 7 years ago
  
  56cf1072
- when sbo term for reaction didn't exists there was exception thrown · 228abca8
  Piotr Gawron authored 7 years ago
  
  228abca8
Feb 20, 2018
- various style checking warnings fixed · b746ebaa
  Piotr Gawron authored 7 years ago
  
  b746ebaa
Feb 16, 2018
- log4j2 library is excluded from jsbml dependency - so our log4j 1.17 lib is working properly · cb775d2b
  Piotr Gawron authored 7 years ago
  
  cb775d2b
Feb 12, 2018
- sbml function mathML is parsed properly · a3129c01
  Piotr Gawron authored 7 years ago
  
  a3129c01
- renaming of methods · 1678d950
  Piotr Gawron authored 7 years ago
  
  1678d950
- export of modifier type added · 0e9f18f5
  Piotr Gawron authored 7 years ago
  
  0e9f18f5
- export of reaction type added · e4ad45eb
  Piotr Gawron authored 7 years ago
  
  e4ad45eb
- export of species type added · 8aae41bc
  Piotr Gawron authored 7 years ago
  
  8aae41bc
- export of annotations added · 388ff9b0
  Piotr Gawron authored 7 years ago
  
  388ff9b0
- parsing of reaction type from SBO term added · 4fbcf273
  Piotr Gawron authored 7 years ago
  
  4fbcf273
- parsing of sbo terms for modifiers added · 791b6faf
  Piotr Gawron authored 7 years ago
  
  791b6faf
- reaction parser moved to separate package · 7270520e
  Piotr Gawron authored 7 years ago
  
  7270520e
- species types are assigned based on sbo terms · c9d686ee
  Piotr Gawron authored 7 years ago
  
  c9d686ee
- unit tests for parsing sbo terms into species type · 6f47fe03
  Piotr Gawron authored 7 years ago
  
  6f47fe03
- species parser extracted to separte package · 17ba584e
  Piotr Gawron authored 7 years ago
  
  17ba584e
- parsing of annotation added · d9928f4b
  Piotr Gawron authored 7 years ago
  
  d9928f4b
- import export of sbml functions and parameters · f08cfc1e
  Piotr Gawron authored 7 years ago
  
  f08cfc1e
- parsing of global parameters supported · eaea8d6f
  Piotr Gawron authored 7 years ago
  
  eaea8d6f
- full import/export of reaction kinetics · 54134e72
  Piotr Gawron authored 7 years ago
  
  54134e72
- simple export of reaction kinetics · db9da582
  Piotr Gawron authored 7 years ago
  
  db9da582
- import of sbml kinetics · e3ea0423
  Piotr Gawron authored 7 years ago
  
  e3ea0423
- import of sbml reaction kinetics added · abd318d1
  Piotr Gawron authored 7 years ago
  
  abd318d1
- comparators refactored - common functionality extracted to abstract class · 1afa2c3a
  Piotr Gawron authored 7 years ago
  
  1afa2c3a
- export/import of name/id supported · 66253f89
  Piotr Gawron authored 7 years ago
  
  66253f89
- sbml parser is available via rest API · 387d7597
  Piotr Gawron authored 7 years ago
  
  387d7597
- invalid file extracted to separate example list · 45c4fbb1
  Piotr Gawron authored 7 years ago
  
  45c4fbb1
- export of sbml trigger is supported now · 565659de
  Piotr Gawron authored 7 years ago
  
  565659de
- export of reaction layout added · d5e5d509
  Piotr Gawron authored 7 years ago
  
  d5e5d509
- export of sbml reaction with few graphical representation handled · 97f0c33a
  Piotr Gawron authored 7 years ago
  
  97f0c33a
- notes are extracted properly · b3c504ac
  Piotr Gawron authored 7 years ago
  
  b3c504ac