Commits · a123fb5807c9479699f71bbc2c0b73bb165c1eeb · minerva / core · GitLab

Snippets Groups Projects

Jan 03, 2019
- basic export of modificationrediues implemented · a123fb58
  Piotr Gawron authored 6 years ago
  
  a123fb58
- layout also layout modification residues if present and without layout · b04fef5d
  Piotr Gawron authored 6 years ago
  
  b04fef5d
- unused field removed from db · 173407fe
  Piotr Gawron authored 6 years ago
  
  173407fe
- species types and species feature are created when necessary · e819e032
  Piotr Gawron authored 6 years ago
  
  e819e032
Jan 02, 2019
- serialization issue - logger should be a static field · 293aa8d1
  Piotr Gawron authored 6 years ago
  
  293aa8d1
- logger changed to transient property · 885711cd
  Piotr Gawron authored 6 years ago
  
  885711cd
- method signature fixed · 1e393c97
  Piotr Gawron authored 6 years ago
  
  1e393c97
- adding modification residues is class dependent (there is no possibil;ity to... · 24e9d06d
  Piotr Gawron authored 6 years ago
  
  adding modification residues is class dependent (there is no possibil;ity to add invalid residue type)
  24e9d06d
- export with MULTI property separates species wth different structural state · e1bf8b03
  Piotr Gawron authored 6 years ago
  
  e1bf8b03
- acceptance test for import export featers into multi · 79cbd71a
  Piotr Gawron authored 6 years ago
  
  79cbd71a
- unit tests for checking if sbml with multi examples (from specification) are parseable · ff3c5cb0
  Piotr Gawron authored 6 years ago
  
  ff3c5cb0
- method to extract id of position to compartment feature extracted · fdf3237e
  Piotr Gawron authored 6 years ago
  
  fdf3237e
- method to obtain id of structural state feature extracted · a3fdae90
  Piotr Gawron authored 6 years ago
  
  a3fdae90
- method providing species type id extracted · cd164f44
  Piotr Gawron authored 6 years ago
  
  cd164f44
- export/import of position to compartment implemented · 29c25fc9
  Piotr Gawron authored 6 years ago
  
  29c25fc9
- unused variable removed · 9e5f374c
  Piotr Gawron authored 6 years ago
  
  9e5f374c
Dec 31, 2018
- not supported kinetcs attributes are not passed into our model · aefaa1d7
  Piotr Gawron authored 6 years ago
  
  aefaa1d7
- test cases from CBML multi specification · 804e3371
  Piotr Gawron authored 6 years ago
  
  804e3371
- parsing of structural state added · 9e8db41b
  Piotr Gawron authored 6 years ago
  
  9e8db41b
- parsing type from species type SBO term added · df26fb65
  Piotr Gawron authored 6 years ago
  
  df26fb65
- fix for https://github.com/sbmlteam/jsbml/issues/158 bug · a12c4ce9
  Piotr Gawron authored 6 years ago
  
  a12c4ce9
- exportElement doesn't take sbmlModel as a parameter · 81538328
  Piotr Gawron authored 6 years ago
  
  81538328
- export refactored (it doesn't take layout is a constructor parameter anymore) · 6fbe9845
  Piotr Gawron authored 6 years ago
  
  6fbe9845
- export of species includes structural state proeprty · a1c5b4a7
  Piotr Gawron authored 6 years ago
  
  a1c5b4a7
- multi species type is exported · 399e0c4c
  Piotr Gawron authored 6 years ago
  
  399e0c4c
Dec 28, 2018
- species type contains list of all structural state values in the proper feature · e9ffb42c
  Piotr Gawron authored 6 years ago
  
  e9ffb42c
- layout is no longer passed as an argument - it's always taken from the model · f9e55b64
  Piotr Gawron authored 6 years ago
  
  f9e55b64
- JavaDoc added · 842e8541
  Piotr Gawron authored 6 years ago
  
  842e8541
- SBML Model is passed to converter instead of SBML Layout · 75755533
  Piotr Gawron authored 6 years ago
  
  75755533
- unit test to check import export of structural state · 325bae8e
  Piotr Gawron authored 6 years ago
  
  325bae8e
- export types contains structural state feature · d99ec5db
  Piotr Gawron authored 6 years ago
  
  d99ec5db
- export contains list of species type for multi package · 179d6fc5
  Piotr Gawron authored 6 years ago
  
  179d6fc5
- basic test for parsing multi · 7b958814
  Piotr Gawron authored 6 years ago
  
  7b958814
- javadoc added · a4ac9479
  Piotr Gawron authored 6 years ago
  
  a4ac9479
- suppoerted sbml packages in export are configurable · 2ef3b3a4
  Piotr Gawron authored 6 years ago
  
  2ef3b3a4
Dec 27, 2018
- Merge branch '595-allow-to-open-multiple-data-overlays-using-url-get-param' into 'master' · c38115bf
  Piotr Gawron authored 6 years ago
  
  Resolve "allow to open multiple data overlays using url GET param" Closes #595 See merge request !553
  c38115bf
- changelog added · 19c74aba
  Piotr Gawron authored 6 years ago
  
  19c74aba
- search by drug, mirna, chemicals is supported via url GET parameter · 92761761
  Piotr Gawron authored 6 years ago
  
  92761761
- search by coordinates url parameter contains zoom level · 52699f91
  Piotr Gawron authored 6 years ago
  
  52699f91
- data overlay ids are stored in url GET param · 4a358f8b
  Piotr Gawron authored 6 years ago
  
  4a358f8b