Commits · d5e5d5090e98771049ff13e77708eacb2945d8aa · minerva / core · GitLab

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Feb 12, 2018
- export of reaction layout added · d5e5d509
  Piotr Gawron authored 7 years ago
  
  d5e5d509
- export of sbml reaction with few graphical representation handled · 97f0c33a
  Piotr Gawron authored 7 years ago
  
  97f0c33a
- notes are extracted properly · b3c504ac
  Piotr Gawron authored 7 years ago
  
  b3c504ac
- common parsing interface for bioentities exracted · 660e66bd
  Piotr Gawron authored 7 years ago
  
  660e66bd
- simple export of reaction layout · 23a161c8
  Piotr Gawron authored 7 years ago
  
  23a161c8
- export/import of model size added · 7a25a141
  Piotr Gawron authored 7 years ago
  
  7a25a141
- unit test checking if export of empty map is working · 2d707314
  Piotr Gawron authored 7 years ago
  
  2d707314
- export of modelId added · d8d47f80
  Piotr Gawron authored 7 years ago
  
  d8d47f80
- export of elements use autogenerated ids · c94158a7
  Piotr Gawron authored 7 years ago
  
  c94158a7
- export of sbml reaction without layout · 836994f3
  Piotr Gawron authored 7 years ago
  
  836994f3
- simple layout algorithm implemented · 156a4eae
  Piotr Gawron authored 7 years ago
  
  156a4eae
- getModel method added to BioEntity · a7270a54
  Piotr Gawron authored 7 years ago
  
  a7270a54
- simple export of species implemeted · 14cea5ea
  Piotr Gawron authored 7 years ago
  
  14cea5ea
- export of compartments implemented · 154f1e68
  Piotr Gawron authored 7 years ago
  
  154f1e68
- invalid sbml moved to invalid examples · 84d68726
  Piotr Gawron authored 7 years ago
  
  84d68726
- reversible reactions have arrows in two directions · 310d7d76
  Piotr Gawron authored 7 years ago
  
  310d7d76
- vizualization issue - center rectangle in the wrong point · aaf6963c
  Piotr Gawron authored 7 years ago
  
  aaf6963c
- when mix of layouted and non layouted elements is found, nonlayouted elements... · 993a6c4d
  Piotr Gawron authored 7 years ago
  
  when mix of layouted and non layouted elements is found, nonlayouted elements are put below the layout
  993a6c4d
- handling of the situation when layout ids are not unique for reactions · c1b0296b
  Piotr Gawron authored 7 years ago
  
  c1b0296b
- layout for reaction with single product has proper arrows · 7da306af
  Piotr Gawron authored 7 years ago
  
  7da306af
- unit tests simplified using mockito · d74021c7
  Piotr Gawron authored 7 years ago
  
  d74021c7
- unit tests simplified · 838749dc
  Piotr Gawron authored 7 years ago
  
  838749dc
- when no information about modifier is provided then Modulation is used as default · b5e0e7f2
  Piotr Gawron authored 7 years ago
  
  b5e0e7f2
- sbml parser adds proper arrows for reactions without layout · cb30cb0b
  Piotr Gawron authored 7 years ago
  
  cb30cb0b
- git ignore updated · 76a8b181
  Piotr Gawron authored 7 years ago
  
  76a8b181
- errornous reaction catch · 60d58caf
  Piotr Gawron authored 7 years ago
  
  60d58caf
- basic layout for reactions added · ba0545cb
  Piotr Gawron authored 7 years ago
  
  ba0545cb
- operators for reaction added · 7f88dcd6
  Piotr Gawron authored 7 years ago
  
  7f88dcd6
- layout for reaction is taken into consideration · 8001b954
  Piotr Gawron authored 7 years ago
  
  8001b954
- basic parser for reactions · 5cea11f3
  Piotr Gawron authored 7 years ago
  
  5cea11f3
- default species type changed to SimpleMolecule · 83210e46
  Piotr Gawron authored 7 years ago
  
  83210e46
- parsing of relation between compartment and species added · a00c1ad1
  Piotr Gawron authored 7 years ago
  
  a00c1ad1
- parsing of sbml species added · 92c8dc5c
  Piotr Gawron authored 7 years ago
  
  92c8dc5c
- typos · c08fbd39
  Piotr Gawron authored 7 years ago
  
  c08fbd39
- sbml converter package · 0aaf789c
  Piotr Gawron authored 7 years ago
  
  basic parsing of compartments
  0aaf789c
- new line character switched to linux + typos fixed · 60cffa1d
  Piotr Gawron authored 7 years ago
  
  60cffa1d
- unit test don't log to the file · eb29625d
  Piotr Gawron authored 7 years ago
  
  eb29625d
Jan 26, 2018
- Merge branch 'small-refactor' into 'master' · 8b86a41d
  Piotr Gawron authored 7 years ago
  
  Small refactor See merge request piotr.gawron/minerva!177
  8b86a41d
- missing import added · 2fcc7278
  Piotr Gawron authored 7 years ago
  
  2fcc7278
- rename AbstractOverlayElement -> AbstractSurfaceElement to match file name · 25d297cf
  Piotr Gawron authored 7 years ago
  
  25d297cf