Commits · f5096cb844ee3a4a237f6ebd6aebc2a2d0418687 · minerva / core

Jan 02, 2017
- when saving model in cache project is also processed · f5096cb8
  Piotr Gawron authored 8 years ago
  
  it can have impact on performance...
  f5096cb8
- comparison fixed to not throw NPE · 2b796056
  Piotr Gawron authored 8 years ago
  
  2b796056
- when accessing non existing project exception was thrown · 6a5b4da0
  Piotr Gawron authored 8 years ago
  
  6a5b4da0
- cleaning test file · b5dca6d2
  Piotr Gawron authored 8 years ago
  
  parsing this file will not return warnings anymore
  b5dca6d2
- additional check user privilege function added · 10db0f8a
  Piotr Gawron authored 8 years ago
  
  10db0f8a
- user should be able to access project when have manage project privilege · 21b29ecb
  Piotr Gawron authored 8 years ago
  
  21b29ecb
Dec 30, 2016
- comment rest api improved · 36334fb7
  Piotr Gawron authored 8 years ago
  
  36334fb7
- listComments method added to API · 8889ef1a
  Piotr Gawron authored 8 years ago
  
  8889ef1a
- new REST API method added for users: logout, tokenStatus · bf707a77
  Piotr Gawron authored 8 years ago
  
  bf707a77
Nov 30, 2016
- additional rest methods · dc581fa0
  Piotr Gawron authored 8 years ago
  
  getElements getReactions getOverlays
  dc581fa0
Nov 23, 2016
- rest api for getting general info about layouts · 68c80602
  Piotr Gawron authored 8 years ago
  
  68c80602
Nov 17, 2016

Piotr Gawron authored 8 years ago

* login and rest token managament implemented
* getting of project info via rest added

8304918f

Nov 07, 2016
- data mining is incorporated in the model · 57ef3e3d
  Piotr Gawron authored 8 years ago
  
  57ef3e3d
- gene variant allel frequency support added · a6e2c39a
  Piotr Gawron authored 8 years ago
  
  a6e2c39a
Oct 28, 2016
- model annotation are model scope (not project) · aa2f032b
  Piotr Gawron authored 8 years ago
  
  aa2f032b
Oct 27, 2016
- unnecessary code from biocompendium removed and tests added · 90356704
  Piotr Gawron authored 8 years ago
  
  90356704
- issue #10 - sbgn format moved from model to project · cff9d812
  Piotr Gawron authored 8 years ago
  
  cff9d812
- model warnings moved to project (issue #9 ) · 24d6947d
  Piotr Gawron authored 8 years ago
  
  24d6947d
Oct 26, 2016
- comments on submaps are centered correctly · ba171932
  Piotr Gawron authored 8 years ago
  
  ba171932
Oct 25, 2016
- issue #41 , work in progress · a3543194
  Piotr Gawron authored 8 years ago
  
  submaps are opening from link (when accessing it from coment tab in admin panel), however centering is still not handled properly
  a3543194
- javadocs · f36820f1
  Piotr Gawron authored 8 years ago
  
  f36820f1
Oct 24, 2016

work in progress - overlay colors are framework parameters · 668e2a0e

Piotr Gawron authored 8 years ago

there are two type of overlay colors:
* user scope (every user account have custom color schema)
* system scope used when user colors are not defined

668e2a0e

Oct 11, 2016
- not compiling work in progress ;/ · 243751d7
  Piotr Gawron authored 8 years ago
  
  243751d7
- fix on issue #38 · b4d52b1d
  Piotr Gawron authored 8 years ago
  
  search for multiple drugs returned from time to time more results than queried
  b4d52b1d
- issue #43 - sending names to javascript with ' character aws crashing · 163f6789
  Piotr Gawron authored 8 years ago
  
  connection
  163f6789
Oct 10, 2016
- fix on layout tests · 71a77e79
  piotr.gawron authored 8 years ago
  
  71a77e79
Oct 06, 2016
- Element.parent property removed · a9e3fb40
  piotr.gawron authored 8 years ago
  
  a9e3fb40
Oct 05, 2016
- renaming of model structures + javadoc update · ec4e94be
  piotr.gawron authored 8 years ago
  
  ec4e94be
- model javadoc added and structure refactoried · f8f4a66f
  piotr.gawron authored 8 years ago
  
  f8f4a66f
Oct 04, 2016
- polishing distinction betwen model and celldesigner parser · a18fbfa6
  piotr.gawron authored 8 years ago
  
  a18fbfa6
Oct 03, 2016
- base refactoring finsihed · cd8d1eb1
  piotr.gawron authored 8 years ago
  
  classes renamed to species (there are no aliases anymore) database data about annotators cleared
  cd8d1eb1
- old CD structures don't refer to db anymore · ad998297
  piotr.gawron authored 8 years ago
  
  ad998297
- model and db refactoried, almost all test pass · 6db1fa6f
  piotr.gawron authored 8 years ago
  
  6db1fa6f
Oct 01, 2016
- all clases compile · e367d4be
  piotr.gawron authored 8 years ago
  
  e367d4be
Sep 30, 2016
- cell designer structures moved to celldesigner module, in progress · d357d2b2
  piotr.gawron authored 8 years ago
  
  d357d2b2
Sep 28, 2016

partial working new model: · af954491

piotr.gawron authored 8 years ago

model refactoried, celldesigner parser passes tests

the rest stil to be done

af954491

Sep 26, 2016
- whitespace characters · 2e02f011
  piotr.gawron authored 8 years ago
  
  2e02f011
- temp commit - species alias is abstract and there are specific alias · 0eff3a99
  piotr.gawron authored 8 years ago
  
  classes for all species
  0eff3a99
Sep 23, 2016

temp commit · 3a1b80c5

piotr.gawron authored 8 years ago

SpeciesAlias implements AnnotatedObject and Element doesn't
most of the tests pass

3a1b80c5

Sep 21, 2016
- export column names changed · 040b94f6
  piotr.gawron authored 8 years ago
  
  v10.0.1
  
  040b94f6