Skip to content

Resolve "gene variants in molart"

Piotr Gawron requested to merge 500-gene-variants-in-molart into master

Closes #500 (closed)

Hi @david.hoksza,

This merge request will give you access to amino acid change for gene variant. To get information about gene variant for molart integration you would have to do something similar to:

      map.getTopMap().getVisibleDataOverlays().then(function(dataOverlays){
        var overlay = dataOverlays[0];
        return overlay.getFullAliasById(elementId);
      }).then(function(aliasOverlayData){
        // here you have access to all gene variants for element elementId that are available in 
        // the first visible data overlay (there is aminoAcidChange property defined for a single variant)
        aliasOverlayData.getGeneVariants()
      });

In the attachment you can find example file that can be uploaded into the system: gene_variants_aa_change.txt

Edited by Piotr Gawron

Merge request reports

Loading