Commits · 4f09d42a03491867bddcf5103dcd9a31bb08f26f · Susheel Busi / COSMIC2

Jul 24, 2020
- Update snakefile · 4f09d42a
  Susheel Busi authored 4 years ago
  
  4f09d42a
- updated the snakefile and run_snakemake files to include updated vibrant · cc65a0ad
  Susheel Busi authored 4 years ago
  
  cc65a0ad
Jul 16, 2020
- Update get_HGT_contig_ID.sh · ae33e231
  Susheel Busi authored 4 years ago
  
  ae33e231
- script to retrieve ORIGINAL contigIDs and their locations based on HGT events... · e2e53b7f
  Susheel Busi authored 4 years ago
  
  script to retrieve ORIGINAL contigIDs and their locations based on HGT events identified by MetaCHIP
  e2e53b7f
Jul 11, 2020
- adding kraken rules and snakefile · 9b69a5e4
  Susheel Busi authored 4 years ago
  
  9b69a5e4
Jul 01, 2020
- updated the snakefile for correctness of files · 5c998c0d
  Susheel Busi authored 4 years ago
  
  5c998c0d
- changed the vibrant walltime and ncpus for improved SLURM scheduling · 94ce6b5f
  Susheel Busi authored 4 years ago
  
  94ce6b5f
Jun 30, 2020
- cluster.json file updated for all rules · 984c0b64
  Susheel Busi authored 4 years ago
  
  984c0b64
- updated snakefile with vcontact2 rules · 5239f3ad
  Susheel Busi authored 4 years ago
  
  5239f3ad
- conda environment for vContact2 · bb9c7cbd
  Susheel Busi authored 4 years ago
  
  bb9c7cbd
- reverting to old scikit-learn due to conflicts · 9c2d4984
  Susheel Busi authored 4 years ago
  
  9c2d4984
- updated the scikit-learn requirement · f0e91bf8
  Susheel Busi authored 4 years ago
  
  f0e91bf8
- edited the snakefile to get the directory stucture for vibrant correct · c0150b0c
  Susheel Busi authored 4 years ago
  
  c0150b0c
- updated the targets based on VIBRANT's output · fd80d91f
  Susheel Busi authored 4 years ago
  
  fd80d91f
Jun 29, 2020
- samples list for vibrant. Does not include C118 due to missing V6 · 3ccd2ee4
  Susheel Busi authored 4 years ago
  
  3ccd2ee4
- snakefile and related files to run vibrant on cosmic data · fe4620e9
  Susheel Busi authored 4 years ago
  
  fe4620e9
Jun 07, 2020
- Update METACHIP.yaml · 07412bb0
  Susheel Busi authored 4 years ago
  
  07412bb0
- Add new file · d265df1d
  Susheel Busi authored 4 years ago
  
  d265df1d
- Add new file · 2a4b61c2
  Susheel Busi authored 4 years ago
  
  2a4b61c2
Feb 24, 2020
- Update FIGURE_LAYOUT_COSMIC.R · db76f013
  Susheel Busi authored 5 years ago
  
  db76f013
- Upload New File · 61400f7e
  Susheel Busi authored 5 years ago
  
  61400f7e
- Add CHANGELOG · 47b999bc
  Susheel Busi authored 5 years ago
  
  47b999bc
- Upload New File · b0a8f207
  Susheel Busi authored 5 years ago
  
  b0a8f207
- Upload New File · 195f4c08
  Susheel Busi authored 5 years ago
  
  195f4c08
- Upload New File · 1624a720
  Susheel Busi authored 5 years ago
  
  1624a720
- Upload New File · 4d46f501
  Susheel Busi authored 5 years ago
  
  4d46f501
- Upload New File · 9a3a09f3
  Susheel Busi authored 5 years ago
  
  9a3a09f3
- Add new directory · 1062eebb
  Susheel Busi authored 5 years ago
  
  1062eebb
- Upload New File · 620bc723
  Susheel Busi authored 5 years ago
  
  620bc723
- Upload New File · c721f7cd
  Susheel Busi authored 5 years ago
  
  c721f7cd
- Upload New File · 3807273d
  Susheel Busi authored 5 years ago
  
  3807273d
- Upload New File · 60257410
  Susheel Busi authored 5 years ago
  
  60257410
- Add new file · 731925fb
  Susheel Busi authored 5 years ago
  
  731925fb
- Update README.md · 2d904189
  Susheel Busi authored 5 years ago
  
  2d904189
- Add new file · a0d71290
  Susheel Busi authored 5 years ago
  
  a0d71290
- Add new file · 78db6bb5
  Susheel Busi authored 5 years ago
  
  78db6bb5
- Add new file · 8e3794ae
  Susheel Busi authored 5 years ago
  
  8e3794ae
- Add new file · e9acf310
  Susheel Busi authored 5 years ago
  
  e9acf310
- Add new file · b07155ce
  Susheel Busi authored 5 years ago
  
  b07155ce
- Add new file · a1a702b5
  Susheel Busi authored 5 years ago
  
  a1a702b5