WIP: Checkpoint snakefile

2019_GDB/envs/analysis.yaml

+name: analysis
+channels:
+  - anaconda
+  - conda-forge
+  - bioconda
+  - defaults
+  - r
+  - etetoolkit
+  - au-eoed
+dependencies:
+  - _libgcc_mutex=0.1=conda_forge
+  - _openmp_mutex=4.5=0_gnu
+  - bzip2=1.0.8=h516909a_2
+  - ca-certificates=2020.4.5.1=hecc5488_0
+  - curl=7.69.1=h33f0ec9_0
+  - htslib=1.9=h4da6232_3
+  - java-jdk=7.0.91=1
+  - krb5=1.17.1=h2fd8d38_0
+  - libcurl=7.69.1=hf7181ac_0
+  - libdeflate=1.2=h516909a_1
+  - libedit=3.1.20170329=hf8c457e_1001
+  - libgcc-ng=9.2.0=h24d8f2e_2
+  - libgomp=9.2.0=h24d8f2e_2
+  - libssh2=1.9.0=hab1572f_2
+  - libstdcxx-ng=9.2.0=hdf63c60_2
+  - ncurses=6.1=hf484d3e_1002
+  - openssl=1.1.1g=h516909a_0
+  - perl=5.26.2=h14c3975_0
+  - samtools=1.9=h10a08f8_12
+  - tk=8.6.10=hed695b0_0
+  - xz=5.2.5=h516909a_0
+  - zlib=1.2.11=h516909a_1006
+prefix: /home/users/sbusi/apps/miniconda3/envs/analysis
+