taxonomy.smk

# For running the TAXONOMY "workflow"

# specify which rules to run
include:
    '../rules/TAXONOMY_RULES'

# Rule all for TAXONOMY
rule TAXONOMY:    
    input:
        expand(os.path.join(RESULTS_DIR, "Binning/checkm_output/{sample}_output.txt"), sample=BINNING_SAMPLES),
        expand(os.path.join(RESULTS_DIR, "Binning/gtdbtk_output/{sample}/gtdbtk.bac120.summary.tsv"), sample=BINNING_SAMPLES)
    output:
        touch('taxonomy_for_ont.done')