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Commit 0f2fd1e5 authored by Valentina Galata's avatar Valentina Galata
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update of GIS20 config (changes made back then to re-run)

parent 24f2c2bc
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1 merge request!76Merge "cleanup" branch with "master" branch
......@@ -8,7 +8,7 @@
#SBATCH -N 1
#SBATCH -n 1
#SBATCH -c 1
#SBATCH --time=4-00:00:00
#SBATCH --time=0-12:00:00
#SBATCH -p batch
#SBATCH --qos=qos-batch
......@@ -37,4 +37,4 @@ conda activate ${ONTP_ENV}
# run the pipeline
snakemake -s ${ONTP_SMK} -rp --cores ${ONTP_CORES} --configfile ${ONTP_CONFIG} \
--use-conda --conda-prefix ${CONDA_PREFIX}/pipeline \
--cluster-config ${ONTP_SLURM} --cluster "sbatch ${ONTP_CLUSTER}"
--cluster-config ${ONTP_SLURM} --cluster "sbatch ${ONTP_CLUSTER}" --rerun-incomplete
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