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Commit 124a63c0 authored by Valentina Galata's avatar Valentina Galata
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bug in rules/preprocessing_lr.smk: fixed guppy cmd

parent ac1679b0
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1 merge request!76Merge "cleanup" branch with "master" branch
......@@ -17,7 +17,7 @@ checkpoint guppy_gpu_basecalling:
"""
(date && \
{config[guppy][gpu][bin]} --input_path $(dirname {input[0]}) --save_path $(dirname {output}) \
--config config[guppy][config] \
--config {config[guppy][config]} \
--disable_pings --compress_fastq \
--cpu_threads_per_caller {threads} \
-x {config[guppy][gpu][gpu_device]} \
......
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