fixed my (SSB) silly typos - facepalming

2019_GDB/rules/ANALYSIS_RULES

@@ -158,7 +158,7 @@ rule casc:
         os.path.join(RESULTS_DIR, "assembly/{assembly}.fa")
     output:
         cas1=os.path.join(RESULTS_DIR, "analysis/crispr/casc/{assembly}_casc_output/{assembly}.results.txt"),
-        cas2=os.path.join(RESULTS_DIR, "analysis/crispr/casc/{assembly}_casc_output/casc_CRISPR_output.txt")
+#        cas2=os.path.join(RESULTS_DIR, "analysis/crispr/casc/{assembly}_casc_output/casc_CRISPR_output.txt")
 #        cas3=directory(os.path.join(RESULTS_DIR, "analysis/crispr/casc/{assembly}_casc_output"))
     log: os.path.join(RESULTS_DIR, "analysis/crispr/casc/{assembly}_casc_output/casc.log")
     threads: config["mmseq2"]["threads"]
@@ -169,8 +169,8 @@ rule casc:
         export PATH={config[CASC][PATH]} &&\ 
         export PERL5LIB={config[CASC][PERL5LIB]} &&\
         casc -i {input} -o $(dirname {output.cas1}) -n 12 --conservative &&\
-        echo $(basename -s ".results.txt" {output.cas1}) >> {output.cas2} &&\
-        cat {output.cas1}) | awk '$8 == "true" {{sum += $2}} END {{print sum}}' >> {output.cas2} &&\        
+        echo $(basename -s ".results.txt" {output.cas1}) >> results/analysis/crispr/casc/casc_CRISPR_output.txt &&\
+        cat {output.cas1} | awk '$8 == "true" {{sum += $2}} END {{print sum}}' >> results/analysis/crispr/casc/casc_CRISPR_output.txt &&\        
         date) &> >(tee {log})
         """
 

rules/ANALYSIS_RULES

@@ -158,7 +158,7 @@ rule casc:
         os.path.join(RESULTS_DIR, "assembly/{assembly}.fa")
     output:
         cas1=os.path.join(RESULTS_DIR, "analysis/crispr/casc/{assembly}_casc_output/{assembly}.results.txt"),
-        cas2=os.path.join(RESULTS_DIR, "analysis/crispr/casc/{assembly}_casc_output/casc_CRISPR_output.txt")
+#        cas2=os.path.join(RESULTS_DIR, "analysis/crispr/casc/{assembly}_casc_output/casc_CRISPR_output.txt")
 #        cas3=directory(os.path.join(RESULTS_DIR, "analysis/crispr/casc/{assembly}_casc_output"))
     log: os.path.join(RESULTS_DIR, "analysis/crispr/casc/{assembly}_casc_output/casc.log")
     threads: config["mmseq2"]["threads"]
@@ -169,8 +169,8 @@ rule casc:
         export PATH={config[CASC][PATH]} &&\ 
         export PERL5LIB={config[CASC][PERL5LIB]} &&\
         casc -i {input} -o $(dirname {output.cas1}) -n 12 --conservative &&\
-        echo $(basename -s ".results.txt" {output.cas1}) >> {output.cas2} &&\
-        cat {output.cas1}) | awk '$8 == "true" {{sum += $2}} END {{print sum}}' >> {output.cas2} &&\        
+        echo $(basename -s ".results.txt" {output.cas1}) >> results/analysis/crispr/casc/casc_CRISPR_output.txt &&\
+        cat {output.cas1} | awk '$8 == "true" {{sum += $2}} END {{print sum}}' >> results/analysis/crispr/casc/casc_CRISPR_output.txt &&\        
         date) &> >(tee {log})
         """