fixed a type in analysis.smk (rules/steps) in target paths

workflow/rules/analysis.smk

@@ -48,7 +48,7 @@ rule analysis_bbmap_rename:
     input:
         os.path.join(RESULTS_DIR, "annotation/prodigal/{rtype}/{tool}/proteins.faa")
     output:
-        temp(os.path.join(RESULTS_DIR, "annalysis/cdhit/{rtype}_{tool}.faa"))
+        temp(os.path.join(RESULTS_DIR, "analysis/cdhit/{rtype}_{tool}.faa"))
     log:
         out="logs/analysis_bbmap_rename_{rtype}.{tool}.out.log",
         err="logs/analysis_bbmap_rename_{rtype}.{tool}.err.log"
@@ -69,11 +69,11 @@ rule analysis_bbmap_rename:
 
 rule analysis_cdhit:
     input:
-        faa1=os.path.join(RESULTS_DIR, "annalysis/cdhit/{rtype1}_{tool1}.faa"),
-        faa2=os.path.join(RESULTS_DIR, "annalysis/cdhit/{rtype2}_{tool2}.faa")
+        faa1=os.path.join(RESULTS_DIR, "analysis/cdhit/{rtype1}_{tool1}.faa"),
+        faa2=os.path.join(RESULTS_DIR, "analysis/cdhit/{rtype2}_{tool2}.faa")
     output:
-        faa12=os.path.join(RESULTS_DIR, "annalysis/cdhit/{rtype1}_{tool1}__{rtype2}_{tool2}.faa"),
-        faa21=os.path.join(RESULTS_DIR, "annalysis/cdhit/{rtype2}_{tool2}__{rtype1}_{tool1}.faa")
+        faa12=os.path.join(RESULTS_DIR, "analysis/cdhit/{rtype1}_{tool1}__{rtype2}_{tool2}.faa"),
+        faa21=os.path.join(RESULTS_DIR, "analysis/cdhit/{rtype2}_{tool2}__{rtype1}_{tool1}.faa")
     log:
         out="logs/analysis_cdhit.{rtype1}.{tool1}.{rtype2}.{tool2}.out.log",
         err="logs/analysis_cdhit.{rtype1}.{tool1}.{rtype2}.{tool2}.err.log"

workflow/steps/analysis.smk

@@ -29,11 +29,11 @@ rule ANALYSIS_PROTEINS:
             rtype_tool=["%s/%s" % (rtype, tool) for rtype, tool in READ_ASSEMBLERS]
         ),
         expand(
-            os.path.join(RESULTS_DIR, "annalysis/cdhit/{combi}.faa"),
+            os.path.join(RESULTS_DIR, "analysis/cdhit/{combi}.faa"),
             combi=["%s_%s__%s_%s" % (p[0][0], p[0][1], p[1][0], p[1][1]) for p in READ_ASSEMBLER_PAIRS]
         ),
         expand(
-            os.path.join(RESULTS_DIR, "annalysis/cdhit/{combi}.faa"),
+            os.path.join(RESULTS_DIR, "analysis/cdhit/{combi}.faa"),
             combi=["%s_%s__%s_%s" % (p[1][0], p[1][1], p[0][0], p[0][1]) for p in READ_ASSEMBLER_PAIRS]
         )
     output: