included calling the date in the shell

2019_GDB/rules/ANALYSIS_RULES

@@ -165,11 +165,13 @@ rule casc:
     conda: "../envs/analysis.yaml"
     shell:
         """
-        export PATH={config[CASC][PATH]} 
+        (date
+        export PATH={config[CASC][PATH]}
         export PERL5LIB={config[CASC][PERL5LIB]} 
         casc -i {input} -o $(dirname {output.cas1}) -n 12 --conservative 
         echo $(basename -s ".results.txt" {output.cas1}) >> results/analysis/crispr/casc/casc_CRISPR_output.txt 
         cat {output.cas1} | awk '$8 == "true" {{sum += $2}} END {{print sum}}' >> results/analysis/crispr/casc/casc_CRISPR_output.txt 
+        date) &> >(tee {log})
         """
 
 rule minced:

rules/ANALYSIS_RULES

@@ -165,11 +165,13 @@ rule casc:
     conda: "../envs/analysis.yaml"
     shell:
         """
-        export PATH={config[CASC][PATH]} 
+        (date
+        export PATH={config[CASC][PATH]}
         export PERL5LIB={config[CASC][PERL5LIB]} 
         casc -i {input} -o $(dirname {output.cas1}) -n 12 --conservative 
         echo $(basename -s ".results.txt" {output.cas1}) >> results/analysis/crispr/casc/casc_CRISPR_output.txt 
         cat {output.cas1} | awk '$8 == "true" {{sum += $2}} END {{print sum}}' >> results/analysis/crispr/casc/casc_CRISPR_output.txt 
+        date) &> >(tee {log})
         """
 
 rule minced: