Update Snakefile

workflow_zymo/Snakefile

@@ -238,7 +238,7 @@ rule comparison:
         for fname in input.cdhit:
             fname_col=os.path.basename(fname).split("__")[0] # column name to be used
             fname_pids=[]
-            with open(input.cdhit,'r') as fi:
+            with open(fname,'r') as fi:
                 for ln in fi:
                     if ln.startswith('>'):
                         fname_pids.append(re.sub("^>", "", ln.strip().split(" ")[0]))