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Commit 64fe2ff8 authored by Valentina Galata's avatar Valentina Galata
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mapping step: fixed a bug - wrong names for targets

parent e4c8ebf0
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......@@ -7,7 +7,7 @@ rule MAPPING:
input:
metag=expand(
os.path.join(RESULTS_DIR, "mapping/metag/{rtype_tool}.bam"),
rtype_tool=["{r}/{t}/ASSEMBLY_{r}".format(r=r, t=t) for r, t in READ_ASSEMBLERS]
rtype_tool=["{r}/{t}/ASSEMBLY.{r}".format(r=r, t=t) for r, t in READ_ASSEMBLERS]
),
metat=expand(
os.path.join(RESULTS_DIR, "mapping/metat/{rtype_tool}.bam"),
......@@ -20,7 +20,7 @@ rule COVERAGE:
input:
metag=expand(
os.path.join(RESULTS_DIR, "mapping/metag/{rtype_tool}.cov.ave.txt"),
rtype_tool=["{r}/{t}/ASSEMBLY_{r}".format(r=r, t=t) for r, t in READ_ASSEMBLERS]
rtype_tool=["{r}/{t}/ASSEMBLY.{r}".format(r=r, t=t) for r, t in READ_ASSEMBLERS]
),
metat=expand(
os.path.join(RESULTS_DIR, "mapping/metat/{rtype_tool}.cov.ave.txt"),
......
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