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Commit 6ccd4acc authored by Susheel Busi's avatar Susheel Busi
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updated slurm file for MOCK run

parent f6f57407
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1 merge request!76Merge "cleanup" branch with "master" branch
__default__:
time: "0-02:00:00"
time: "0-10:00:00"
partition: "batch"
qos: "qos-batch"
nodes: 1
......@@ -29,7 +29,7 @@ fastp_sr:
# Assembly
assembly_lr_flye:
time: "00-8:00:00"
time: "00-10:00:00"
partition: "bigmem"
qos: "qos-bigmem"
nodes: 1
......@@ -61,7 +61,7 @@ assembly_hy_metaspades:
explicit: ""
assembly_hy_operams:
time: "00-4:00:00"
time: "00-10:00:00"
partition: "bigmem"
qos: "qos-bigmem"
nodes: 1
......@@ -70,7 +70,7 @@ assembly_hy_operams:
# Mapping
bwa_index_assembly:
time: "00-02:00:00"
time: "00-10:00:00"
partition: "batch"
qos: "qos-batch"
nodes: 1
......@@ -78,7 +78,7 @@ bwa_index_assembly:
explicit: ""
bwa_mem_assembly_sr:
time: "00-06:00:00"
time: "00-10:00:00"
partition: "batch"
qos: "qos-batch"
nodes: 1
......@@ -86,7 +86,7 @@ bwa_mem_assembly_sr:
explicit: ""
bwa_mem_assembly_lr:
time: "00-06:00:00"
time: "00-10:00:00"
partition: "batch"
qos: "qos-batch"
nodes: 1
......@@ -94,7 +94,7 @@ bwa_mem_assembly_lr:
explicit: ""
bwa_mem_assembly_hy:
time: "00-06:00:00"
time: "00-10:00:00"
partition: "batch"
qos: "qos-batch"
nodes: 1
......@@ -103,7 +103,7 @@ bwa_mem_assembly_hy:
# Assembly polishing
bwa_index_assembly_polishing:
time: "00-02:00:00"
time: "00-10:00:00"
partition: "batch"
qos: "qos-batch"
nodes: 1
......@@ -111,7 +111,7 @@ bwa_index_assembly_polishing:
explicit: ""
bwa_mem_assembly_polishing:
time: "00-06:00:00"
time: "00-10:00:00"
partition: "batch"
qos: "qos-batch"
nodes: 1
......@@ -119,7 +119,7 @@ bwa_mem_assembly_polishing:
explicit: ""
polishing_lr_racon:
time: "00-04:00:00"
time: "00-10:00:00"
partition: "bigmem"
qos: "qos-bigmem"
nodes: 1
......@@ -152,7 +152,7 @@ annotation_diamond_daa:
explicit: ""
annotation_plasflow:
time: "00-01:00:00"
time: "00-04:00:00"
partition: "bigmem"
qos: "qos-bigmem"
nodes: 1
......
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