updated step taxonomy

Snakefile

@@ -99,10 +99,10 @@ if 'binning' in STEPS:
         "workflow/steps/binning.smk"
     TARGETS += ["binning_for_ont.done"]
 
-# if 'taxonomy' in STEPS:
-#     include:
-#         "workflows/taxonomy.smk"
-#     TARGETS += ["taxonomy_for_ont.done"]
+if 'taxonomy' in STEPS:
+    include:
+        "workflow/steps/taxonomy.smk"
+    TARGETS += ["taxonomy_for_ont.done"]
 
 # if 'analysis' in STEPS:
 #     include:

workflow/steps/taxonomy.smk

@@ -2,7 +2,7 @@
 
 # specify which rules to run
 include:
-    '../rules/TAXONOMY_RULES'
+    '../rules/taxonomy.smk'
 
 # Rule all for TAXONOMY
 rule TAXONOMY: