changed structure to incl metat: updated prepare_input and preprocessing, other minor changes (a17cbe8b) · Commits · ESB / ONT_pilot_gitlab · GitLab

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a17cbe8b

Commit a17cbe8b authored 4 years ago by Valentina Galata

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changed structure to incl metat: updated prepare_input and preprocessing, other minor changes

parent d305f372

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config/config.yaml 26 additions, 21 deletions

config/config.yaml
sbatch.sh 4 additions, 2 deletions

sbatch.sh
workflow/Snakefile 45 additions, 44 deletions

workflow/Snakefile
workflow/rules/prepare_input.smk 2 additions, 2 deletions

workflow/rules/prepare_input.smk
workflow/rules/preprocessing.smk 114 additions, 0 deletions

workflow/rules/preprocessing.smk
workflow/scripts/utils.py 15 additions, 0 deletions

workflow/scripts/utils.py
workflow/steps/prepare_input.smk 1 addition, 1 deletion

workflow/steps/prepare_input.smk
workflow/steps/preprocessing.smk 5 additions, 7 deletions

workflow/steps/preprocessing.smk

with 212 additions and 77 deletions

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