report: minor updates for the plots

workflow_report/scripts/report.R

@@ -220,7 +220,7 @@ if("diamond" %in% snakemake@config$steps_annotation){
         geom_density(alpha=0.1) +
         scale_colour_manual(values=ASM_TOOL_COLORS, guide=NULL) +
         scale_fill_manual(values=ASM_TOOL_COLORS, guide=NULL) +
-        facet_wrap(vars(tool), ncol=1, scales="fixed") +
+        facet_wrap(vars(tool), ncol=1, scales="free_y") +
         labs(
             x="Query/subject length ratio",
             y="Density"

workflow_report/scripts/report.Rmd

@@ -113,13 +113,13 @@ print(FIGS$prodigal$glength_violin_le1kb)
 
 ## DIAMOND
 
-```{r figures-diamond-density, echo=FALSE, fig.width=10, fig.height=10, fig.cap='nr UniProtKB/TrEMBL, density'}
+```{r figures-diamond-density, echo=FALSE, fig.width=10, fig.height=16, fig.cap='nr UniProtKB/TrEMBL, density'}
 if(!is.null(FIGS$diamond)){
     FIGS$diamond$density
 }
 ```
 
-```{r figures-diamond-zoom, echo=FALSE, fig.width=10, fig.height=10, fig.cap='nr UniProtKB/TrEMBL, zoomed in'}
+```{r figures-diamond-zoom, echo=FALSE, fig.width=10, fig.height=14, fig.cap='nr UniProtKB/TrEMBL, zoomed in'}
 if(!is.null(FIGS$diamond)){
     FIGS$diamond$violin_zoom
 }
@@ -127,7 +127,7 @@ if(!is.null(FIGS$diamond)){
 
 ## CD-HIT
 
-```{r figures-cdhit, echo=FALSE, fig.width=10, fig.height=10}
+```{r figures-cdhit, echo=FALSE, fig.width=10, fig.height=16}
 if(!is.null(FIGS$cdhit)){
     FIGS$cdhit
 }