config/import clean-up: plot

2019_GDB/rules/PLOT_RULES

 # For running the MMSEQ2 comparison of proteins after assemblies are run through prokka/prodigal
 
-import os
-#from tempfile import TemporaryDirectory
-
-configfile: "config/CONFIG.yaml"
-#DATA_DIR = config["data_dir"]
-RESULTS_DIR = config["results_dir"]
-#DB_DIR=config["db_dir"]
-BARCODES=config["barcodes"]
-#ASSEMBLERS=config["assemblers"]
-#MAPPERS=["bwa", "mm"]
-## SAMPLES=config["samples"]
-#SAMPLES=["flye", "megahit", "metaspades_hybrid"]
-#BINNING_SAMPLES=config["binning_samples"]
-#HYBRID_ASSEMBLER=config["hybrid_assembler"]
 SR_PREFIX="ONT3_MG_xx_Rashi_S11"
 
-
 #############################
 ###### IGC COVERAGE  ########
 #############################