Merge branch 'work' into 'master'

added rules for running basecall_qc_merge_NO_MOD.done

See merge request susheel.busi/ont_pilot_gitlab!9

Snakefile

@@ -110,6 +110,17 @@ rule BASECALL_MERGE_QC:
         touch {output}
         """
 
+rule BASECALL_MERGE_QC_NO_MOD:
+    input:
+        expand(os.path.join(RESULTS_DIR, "basecalled_NO_MOD/merged/{barcode}.fastq.gz"), barcode=BARCODES),
+        expand(os.path.join(RESULTS_DIR, "qc/lr/merged/{barcode}/{barcode}NanoStats_NO_MOD.txt"), barcode=BARCODES),
+        expand(os.path.join(RESULTS_DIR, "qc/lr/{run}/{barcode}/{barcode}NanoStats_NO_MOD.txt"), run=RUNS, barcode=BARCODES)
+    output: "basecall_merge_qc_NO_MOD.done"
+    shell:
+        """
+        touch {output}
+        """
+
 rule COVERAGE_OF_REFERENCES:
     input: 
         expand(os.path.join(RESULTS_DIR, "genomecov/sr/minimap2/{sample}-x-{reference}.avg_cov.txt"), sample=SAMPLES, reference=REFERENCES),