updated operams installation rule and log file name for rgi db

workflow/rules/setup.smk

@@ -31,7 +31,7 @@ rule install_minced:
 # OPERA-MS
 rule install_operams:
     output:
-        os.path.join(MOD_DIR, "operams/OPERA-MS.pl")
+        os.path.join(MOD_DIR, "operams/installation.done")
     log:
         "logs/setup.operams.log"
     params:
@@ -41,7 +41,7 @@ rule install_operams:
     message:
         "Setup: install OPERA-MS"
     shell:
-        "(cd ${params.path} && make && perl utils/install_perl_module.pl && perl OPERA-MS.pl check-dependency) &> {log}"
+        "(cd ${params.path} && make && perl utils/install_perl_module.pl && perl OPERA-MS.pl check-dependency) &> {log} && touch {output}"
 
 # Download RGI data
 rule download_rgi_db:
@@ -81,7 +81,7 @@ rule setup_bbmap_host_ref:
     output:
         os.path.join(DB_DIR, "{bname}.fasta")
     log:
-        "logs/setup.bbmap.hostref.log"
+        "logs/setup.bbmap.hostref.{bname}.log"
     params:
         url=lambda wildcards, output: config["bbmap"]["host_refs"][wildcards.bname]
     shell: