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Commit e15e36d8 authored by Valentina Galata's avatar Valentina Galata
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annotation: plasflow: increased number of threads (to have more mem for the job)

parent 0f48dfea
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......@@ -120,7 +120,7 @@ rule annotation_plasflow:
wildcard_constraints:
rtype="|".join(READ_TYPES),
tool="|".join(ASSEMBLERS)
threads: 1
threads: 5
params:
script=os.path.join(SRC_DIR, "filter_fasta_by_length.pl"),
threshold=0.7, # class. prob. threshold
......@@ -181,4 +181,4 @@ rule annotation_hmm_kegg:
message:
"Annotation: HMM search (KEGG): {input}"
shell:
"(date && (hmmsearch --cpu {threads} --noali --notextw --tblout {output} {input.hmm} {input.faa}) > /dev/null && date) &> {log}"
\ No newline at end of file
"(date && (hmmsearch --cpu {threads} --noali --notextw --tblout {output} {input.hmm} {input.faa}) > /dev/null && date) &> {log}"
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