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Commit e71b9507 authored by Valentina Galata's avatar Valentina Galata
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updated GDB config: added mapping back to the steps

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......@@ -3,7 +3,7 @@
# Steps to be done
# steps: ["preprocessing", "assembly", "mapping", "annotation", "analysis", "taxonomy"]
steps: ["preprocessing", "assembly", "annotation", "analysis", "taxonomy"]
steps: ["preprocessing", "assembly", "mapping", "annotation", "analysis", "taxonomy"]
steps_annotation: ["diamond", "rgi", "plasflow", "minced", "barrnap"] # prodigal is run in any case
steps_analysis: ["quast", "cdhit", "mash_dist"]
steps_taxonomy: ["kraken2", "kaiju"]
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