launcher script updated

MODULAR_SNAKEFILE/src/snakemake_run_use_conda_FINAL.sh

@@ -17,4 +17,4 @@ fi
 MAILUSER="susheel.busi@uni.lu"
 
 SLURM_ARGS="-p {cluster.partition} -N 1 -n {cluster.n} -c {cluster.ncpus} -t {cluster.time} --job-name={cluster.job-name} --mail-user ${MAILUSER} --mail-type {cluster.mail-type} -o {cluster.output} -e {cluster.error} {cluster.explicit}"
-(date; conda activate snakemake; export PATH=$PATH:"/home/users/sbusi/apps/ont-guppy/bin/"; snakemake -j 4 --cluster-config cluster.json --cluster "sbatch $SLURM_ARGS" -s SNAKEFILE -p --use-conda ${TARGET} ; date) &> ${LOG}
+(date; conda activate snakemake; export PATH=$PATH:"/home/users/sbusi/apps/ont-guppy/bin/"; snakemake -j 6 --cluster-config cluster.json --cluster "sbatch $SLURM_ARGS" -s workflows_SNAKEFILE -p --use-conda ${TARGET} ; date) &> ${LOG}