Commits · 53962f7d7e9fe54098b2ee4dbf2f35f6fdd4eb82 · ESB / ONT_pilot_gitlab · GitLab

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Mar 25, 2020
- changes to mmseq2 cluster options · 53962f7d
  Susheel Busi authored 5 years ago
  
  53962f7d
- changes to mmseq2 rules · a7376fd3
  Susheel Busi authored 5 years ago
  
  a7376fd3
- added rules for running MMSEQ2 comparisons · 551e2f15
  Susheel Busi authored 5 years ago
  
  551e2f15
Mar 19, 2020
- included nanopolish indexing · 9ccc29fd
  Susheel Busi authored 5 years ago
  
  9ccc29fd
Mar 18, 2020
- Snakefile updated · d1a9ddb7
  Susheel Busi authored 5 years ago
  
  d1a9ddb7
- minor updates to the gpu_NO_MOD_demux rules · 39fb26ae
  Susheel Busi authored 5 years ago
  
  39fb26ae
- Snakefile updated with parameters suggested by ONT for GPU_Basecalling · f300d548
  Susheel Busi authored 5 years ago
  
  f300d548
- config.yaml updated with parameters suggested by ONT for GPU_Basecalling · 000ab11d
  Susheel Busi authored 5 years ago
  
  000ab11d
- added rules for running basecall_qc_merge_NO_MOD.done · bc33ef69
  Susheel Busi authored 5 years ago
  
  bc33ef69
- added rules for running NanoStat on basecalled files without any methylation modifications · edcc592d
  Susheel Busi authored 5 years ago
  
  edcc592d
- 'rule all' updated · e6f39dee
  Susheel Busi authored 5 years ago
  
  e6f39dee
Mar 17, 2020
- updated files with NO_MOD .cfg basecalling for comparison · 3b5b48dd
  Susheel Busi authored 5 years ago
  
  3b5b48dd
- updated Snakefile · 9bb3c44c
  Susheel Busi authored 5 years ago
  
  9bb3c44c
- minor changes to line 61 · 0885a890
  Susheel Busi authored 5 years ago
  
  0885a890
- this is the original file created by CCL for ONT snakemake analyses · 1fad7a96
  Susheel Busi authored 5 years ago
  
  1fad7a96
- included 'mappers' in other redundant lines · b5b9c190
  Susheel Busi authored 5 years ago
  
  b5b9c190
- added mappers (bwa_mem and minimap2) as variables to reduce redundancy · 32131256
  Susheel Busi authored 5 years ago
  
  32131256
- adding all the pertinent files for the first time to the repository · e77b2621
  Susheel Busi authored 5 years ago
  
  e77b2621
- Initial commit · 82805359
  Susheel Busi authored 5 years ago
  
  82805359