Commits · 63afb9c835d37af57068fd2d1c8cb388b33ccb92 · ESB / ONT_pilot_gitlab

Apr 25, 2020
- Delete 2020-04-25T001631.788549.snakemake.log · 63afb9c8
  Susheel Busi authored 4 years ago
  
  63afb9c8
- Delete 2020-04-24T185419.525822.snakemake.log · f7b3f43c
  Susheel Busi authored 4 years ago
  
  f7b3f43c
- Delete 2020-04-24T185411.179436.snakemake.log · a069015c
  Susheel Busi authored 4 years ago
  
  a069015c
- Delete .Snakefile.swp · f907a457
  Susheel Busi authored 4 years ago
  
  f907a457
- Merge branch 'work' into 'master' · 09ba9e76
  Susheel Busi authored 4 years ago
  
  global snakefile See merge request susheel.busi/ont_pilot_gitlab!52
  09ba9e76
- global snakefile · 2defddca
  Susheel Busi authored 4 years ago
  
  2defddca
- Merge branch 'work' into 'master' · 3b4b4e1b
  Susheel Busi authored 4 years ago
  
  created modular parts of the SNAKEFILE for ease of handling and downstream processes See merge request susheel.busi/ont_pilot_gitlab!51
  3b4b4e1b
- created modular parts of the SNAKEFILE for ease of handling and downstream processes · dc8a6b4f
  Susheel Busi authored 4 years ago
  
  dc8a6b4f
Apr 24, 2020
- Merge branch 'work' into 'master' · 429d6653
  Susheel Busi authored 4 years ago
  
  added parameters for binning See merge request susheel.busi/ont_pilot_gitlab!50
  429d6653
- added parameters for binning · 898bd724
  Susheel Busi authored 4 years ago
  
  898bd724
- Merge branch 'work' into 'master' · a38f8942
  Susheel Busi authored 4 years ago
  
  Work See merge request susheel.busi/ont_pilot_gitlab!49
  a38f8942
- new GTDBTK conda environment · f46ee664
  Susheel Busi authored 4 years ago
  
  f46ee664
- updated the GTDBTK.yaml environment with the development version since the... · 18bcb007
  Susheel Busi authored 4 years ago
  
  updated the GTDBTK.yaml environment with the development version since the stable conda version is not working
  18bcb007
Apr 23, 2020
- Merge branch 'work' into 'master' · ee1bf195
  Susheel Busi authored 4 years ago
  
  fixed maxbin errors See merge request susheel.busi/ont_pilot_gitlab!48
  ee1bf195
- fixed maxbin errors · 8f00cec7
  Susheel Busi authored 4 years ago
  
  8f00cec7
- Merge branch 'work' into 'master' · 471033c0
  Susheel Busi authored 4 years ago
  
  fixed symlink errors See merge request susheel.busi/ont_pilot_gitlab!47
  471033c0
- fixed symlink errors · c29f1bf0
  Susheel Busi authored 4 years ago
  
  c29f1bf0
- Merge branch 'work' into 'master' · 01fa5007
  Susheel Busi authored 4 years ago
  
  symlinks for the assemblies for BINNING was failing, so updated the symlink command See merge request susheel.busi/ont_pilot_gitlab!46
  01fa5007
- symlinks for the assemblies for BINNING was failing, so updated the symlink command · 81e8ea16
  Susheel Busi authored 4 years ago
  
  81e8ea16
- Merge branch 'work' into 'master' · 486d0add
  Susheel Busi authored 4 years ago
  
  removed the output for the wrapper rule - MAPPING See merge request susheel.busi/ont_pilot_gitlab!45
  486d0add
- removed the output for the wrapper rule - MAPPING · 0444d15c
  Susheel Busi authored 4 years ago
  
  0444d15c
- Merge branch 'work' into 'master' · 468036be
  Susheel Busi authored 4 years ago
  
  Work See merge request susheel.busi/ont_pilot_gitlab!44
  468036be
- more environments added · 72da4f61
  Susheel Busi authored 4 years ago
  
  72da4f61
- added the proper environments for mapping and binning · d5917fb4
  Susheel Busi authored 4 years ago
  
  d5917fb4
- Merge branch 'work' into 'master' · 2f6ab59c
  Susheel Busi authored 4 years ago
  
  minor cosmetic changes to the header See merge request susheel.busi/ont_pilot_gitlab!43
  2f6ab59c
- minor cosmetic changes to the header · a6594d5e
  Susheel Busi authored 4 years ago
  
  a6594d5e
- Merge branch 'work' into 'master' · 96f7729f
  Susheel Busi authored 4 years ago
  
  Work See merge request susheel.busi/ont_pilot_gitlab!42
  96f7729f
- added the parameters for 'map_long_reads_to_hybrid_contigs_w_minimap2' rule · 84f9c44b
  Susheel Busi authored 4 years ago
  
  84f9c44b
- fixed the hybrid_build_bwa_mem_index rule · c9b3f61b
  Susheel Busi authored 4 years ago
  
  c9b3f61b
- Merge branch 'work' into 'master' · 79e11b20
  Susheel Busi authored 4 years ago
  
  moved the Binning part upstream of all rules See merge request susheel.busi/ont_pilot_gitlab!41
  79e11b20
- Snakefile ready to test and take over the world · 565ce080
  Susheel Busi authored 4 years ago
  
  565ce080
- moved the Binning part upstream of all rules · aca81c2f
  Susheel Busi authored 4 years ago
  
  aca81c2f
- Merge branch 'work' into 'master' · 073fa459
  Susheel Busi authored 4 years ago
  
  Final files ready for running the 2018_GDB_ONT analyses See merge request susheel.busi/ont_pilot_gitlab!40
  073fa459
- Final files ready for running the 2018_GDB_ONT analyses · 14a84062
  Susheel Busi authored 4 years ago
  
  14a84062
Apr 22, 2020
- Merge branch 'work' into 'master' · 2b20b52f
  Susheel Busi authored 4 years ago
  
  Updated "near-final" SNAKEFILE and CONFIG.yaml file See merge request susheel.busi/ont_pilot_gitlab!39
  2b20b52f
- Config file with the merges between SB and CCL's version, for the final SNAKEFILE · 927bf1c6
  Susheel Busi authored 4 years ago
  
  927bf1c6
- Snakefile with hybrid-mapping incorporated into CCL's Snakefile · cc44828f
  Susheel Busi authored 4 years ago
  
  cc44828f
- Merge branch 'work' into 'master' · 005643fb
  Susheel Busi authored 4 years ago
  
  updated snakefile and new dastool env See merge request susheel.busi/ont_pilot_gitlab!38
  005643fb
- updated snakefile and new dastool env · 6b3e58f4
  Susheel Busi authored 4 years ago
  
  6b3e58f4
- Merge branch 'work' into 'master' · fcfd8ef4
  Susheel Busi authored 4 years ago
  
  Nearing the final snakefile configuration for all samples See merge request susheel.busi/ont_pilot_gitlab!37
  fcfd8ef4