Commits · f0e7000604d39a88c52232ea5b669b1d995cdb8a · ESB / ONT_pilot_gitlab · GitLab

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May 28, 2020
- added the CRISPR related environments, rules and modified the workflows and... · f0e70006
  Susheel Busi authored 4 years ago
  
  added the CRISPR related environments, rules and modified the workflows and updated_SNAKEFILE accordingly
  f0e70006
- added rules for mappability_index and estimating unique_mapped_reads from BAM files · 9cdb8210
  Susheel Busi authored 4 years ago
  
  9cdb8210
May 15, 2020
- created new ANALYSIS_RULES and workflow for incorporating the cd-hit and quast analyses · 0b5d4048
  Susheel Busi authored 4 years ago
  
  0b5d4048
May 12, 2020
- updated checkpoint rules · edb39754
  Susheel Busi authored 4 years ago
  
  edb39754
- updated rules and workflows for running assembly with spades and mmseq comparisons · 10ce73e6
  Susheel Busi authored 4 years ago
  
  10ce73e6
Apr 25, 2020
- ONT snakefile converted to modular form · d7afc634
  Susheel Busi authored 4 years ago
  
  d7afc634
- Delete 2020-04-25T001612.138705.snakemake.log · e4918caf
  Susheel Busi authored 4 years ago
  
  e4918caf
- Delete 2020-04-25T001631.788549.snakemake.log · 63afb9c8
  Susheel Busi authored 4 years ago
  
  63afb9c8
- Delete 2020-04-24T185419.525822.snakemake.log · f7b3f43c
  Susheel Busi authored 4 years ago
  
  f7b3f43c
- Delete 2020-04-24T185411.179436.snakemake.log · a069015c
  Susheel Busi authored 4 years ago
  
  a069015c
- Delete .Snakefile.swp · f907a457
  Susheel Busi authored 4 years ago
  
  f907a457
- global snakefile · 2defddca
  Susheel Busi authored 4 years ago
  
  2defddca
- created modular parts of the SNAKEFILE for ease of handling and downstream processes · dc8a6b4f
  Susheel Busi authored 4 years ago
  
  dc8a6b4f